Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMA entry

There are 2 chains in PDB entry 1JMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 4THR 105
A
 LYS 1GLU 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1JMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed 310
Helix 2
2
A
76 83Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
157 161Right-handed 310
Helix 5
5
A
198 202Right-handed 310
Helix 6
6
A
204 210Right-handed alpha
Helix 7
7
A
224 238Right-handed alpha
Helix 8
8
A
254 259Right-handed alpha
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There are 7 sheets in PDB entry 1JMA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
36 39anti-parallel
Strand 3
A
27 28anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
56 57anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
80 83anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
99 102anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
173 183parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
93 103anti-parallel
Strand 5
A
106 118anti-parallel
Strand 6
A
129 131anti-parallel
Strand 7
A
35 37parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
173 183parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
93 103anti-parallel
Strand 5
A
106 118anti-parallel
Strand 6
A
134 135anti-parallel
Strand 7
A
220 221anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
68 71anti-parallel
Strand 4
A
248 249parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il