Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMC entry

There are 2 chains in PDB entry 1JMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C 11 C 18
A
 LYS 183GLN 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1JMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
187 189Right-handed 310
Helix 2
2
A
239 248Right-handed alpha
Helix 3
3
A
267 269Right-handed 310
Helix 4
4
A
308 310Right-handed 310
Helix 5
5
A
362 367Right-handed alpha
Helix 6
6
A
406 417Right-handed alpha
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There are 6 sheets in PDB entry 1JMC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
221 227anti-parallel
Strand 5
A
232 238anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
218 221anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
276 279anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 334first strand
Strand 2
A
339 349anti-parallel
Strand 3
A
355 361anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
375 382anti-parallel
Strand 3
A
316 326anti-parallel
Strand 4
A
346 349anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
390 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il