Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMK entry

There are 2 chains in PDB entry 1JMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 2THR 231
O
 GLY 2THR 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
30 33Right-handed 310
Helix 2
2
C
34 41Right-handed alpha
Helix 3
3
C
56 69Right-handed alpha
Helix 4
4
C
80 96Right-handed alpha
Helix 5
5
C
125 133Right-handed alpha
Helix 6
6
C
137 140Right-handed 310
Helix 7
7
C
141 162Right-handed alpha
Helix 8
8
C
190 193Right-handed 310
Helix 9
9
C
206 210Right-handed 310
Helix 10
10
C
212 228Right-handed alpha
Helix 11
11
O
30 33Right-handed 310
Helix 12
12
O
34 41Right-handed alpha
Helix 13
13
O
56 69Right-handed alpha
Helix 14
14
O
81 96Right-handed alpha
Helix 15
15
O
121 130Right-handed alpha
Helix 16
16
O
136 139Right-handed 310
Helix 17
17
O
140 162Right-handed alpha
Helix 18
18
O
190 193Right-handed 310
Helix 19
19
O
206 210Right-handed 310
Helix 20
20
O
212 228Right-handed alpha
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There are 3 sheets in PDB entry 1JMK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
19 24parallel
Strand 4
C
74 79parallel
Strand 5
C
100 106parallel
Strand 6
C
171 176parallel
Strand 7
C
198 202parallel
Strand 8
O
198 202anti-parallel
Strand 9
O
171 176parallel
Strand 10
O
100 106parallel
Strand 11
O
74 79parallel
Strand 12
O
19 24parallel
Strand 13
O
44 49parallel
Strand 14
O
10 13anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
187 188anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
110 111first strand
Strand 2
O
187 188anti-parallel
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