Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMM entry

There is 1 chain in PDB entry 1JMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 464VAL 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1JMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
465 492Right-handed alpha
Helix 2
2
A
529 539Right-handed alpha
Helix 3
3
A
542 548Right-handed alpha
Helix 4
4
A
552 556Right-handed 310
Helix 5
5
A
557 562Right-handed 310
Helix 6
6
A
563 565Right-handed 310
Helix 7
7
A
650 653Right-handed 310
Helix 8
8
A
766 771Right-handed 310
Helix 9
9
A
791 793Right-handed 310
Helix 10
10
A
795 799Right-handed 310
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There are 6 sheets in PDB entry 1JMM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 726first strand
Strand 2
A
729 732anti-parallel
Strand 3
A
704 709anti-parallel
Strand 4
A
781 789anti-parallel
Strand 5
A
669 680anti-parallel
Strand 6
A
621 632anti-parallel
Strand 7
A
605 611anti-parallel
Strand 8
A
518 523anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 726first strand
Strand 2
A
729 732anti-parallel
Strand 3
A
704 709anti-parallel
Strand 4
A
781 789anti-parallel
Strand 5
A
669 680anti-parallel
Strand 6
A
621 632anti-parallel
Strand 7
A
617 618anti-parallel
Strand 8
A
509 510anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 817first strand
Strand 2
A
655 658anti-parallel
Strand 3
A
643 648anti-parallel
Strand 4
A
594 600anti-parallel
Strand 5
A
526 528anti-parallel
Strand 6
A
567 568anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 817first strand
Strand 2
A
655 658anti-parallel
Strand 3
A
643 648anti-parallel
Strand 4
A
594 600anti-parallel
Strand 5
A
573 575anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 551first strand
Strand 2
A
584 585parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 695first strand
Strand 2
A
772 778anti-parallel
Strand 3
A
714 716anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il