Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMO entry

There are 5 chains in PDB entry 1JMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ALA 1GLY 14
H
 ILE 16GLU 247
A
 GLY 54ASP 59
A
 LEU 61ASP 72
A
 ILE 74SER 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1JMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
1 1Right-handed alpha
Helix 2
2
L
7 11Right-handed 310
Helix 3
3
L
14 14Right-handed alpha
Helix 4
4
H
55 58Right-handed 310
Helix 5
5
H
60 60Right-handed 310
Helix 6
6
H
60 62Right-handed 310
Helix 7
7
H
125 130Right-handed alpha
Helix 8
8
H
164 172Right-handed alpha
Helix 9
9
H
185 186Right-handed 310
Helix 10
10
H
234 246Right-handed alpha
Helix 11
11
A
62 69Right-handed alpha
Helix 12
12
A
102 124Right-handed alpha
Helix 13
13
A
135 147Right-handed alpha
Helix 14
14
A
148 150Right-handed 310
Helix 15
15
A
151 162Right-handed alpha
Helix 16
16
A
163 171Right-handed alpha
Helix 17
17
A
175 192Right-handed alpha
Helix 18
18
A
214 226Right-handed alpha
Helix 19
19
A
236 251Right-handed alpha
Helix 20
20
A
285 289Right-handed 310
Helix 21
21
A
343 345Right-handed 310
Helix 22
22
A
346 354Right-handed alpha
Helix 23
23
A
355 366Right-handed alpha
Helix 24
24
A
386 394Right-handed alpha
Helix 25
25
A
396 400Right-handed 310
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There are 7 sheets in PDB entry 1JMO. Click on sheet of interest to get list of strands forming it: A, B, C, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
180 183first strand
Strand 2
H
226 230anti-parallel
Strand 3
H
207 217anti-parallel
Strand 4
H
198 202anti-parallel
Strand 5
H
135 140anti-parallel
Strand 6
H
156 161anti-parallel
Strand 7
H
20 21anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
180 183first strand
Strand 2
H
226 230anti-parallel
Strand 3
H
207 217anti-parallel
Strand 4
A
441 443anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 35first strand
Strand 2
H
39 46anti-parallel
Strand 3
H
51 54anti-parallel
Strand 4
H
104 108anti-parallel
Strand 5
H
81 90anti-parallel
Strand 6
H
64 68anti-parallel
Strand 7
H
30 35anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
367 376parallel
Strand 3
A
301 318anti-parallel
Strand 4
A
290 295anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
367 376parallel
Strand 3
A
301 318anti-parallel
Strand 4
A
323 330anti-parallel
Strand 5
A
334 341anti-parallel
Strand 6
A
456 462anti-parallel
Strand 7
A
467 474anti-parallel
Strand 8
A
132 134anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
198 208parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
415 426parallel
Strand 5
A
378 381anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
198 208parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
415 426parallel
Strand 5
A
384 385anti-parallel
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