Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JMU entry

There are 9 chains in PDB entry 1JMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	ASN 42
B	PRO 43	PRO 675
C	THR 10	ASN 42
D	PRO 43	PRO 675
E	THR 10	ASN 42
F	PRO 43	PRO 675
G	MET 1	GLY 365
H	MET 1	GLY 365
I	MET 1	GLY 365

There are141 helices in PDB entry 1JMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	24	27	Right-handed 310
Helix 2	2	A	37	42	Right-handed alpha
Helix 3	3	B	59	61	Right-handed 310
Helix 4	4	B	68	71	Right-handed 310
Helix 5	5	B	104	120	Right-handed alpha
Helix 6	6	B	121	128	Right-handed alpha
Helix 7	7	B	136	141	Right-handed alpha
Helix 8	8	B	151	157	Right-handed alpha
Helix 9	9	B	167	199	Right-handed alpha
Helix 10	10	B	211	223	Right-handed alpha
Helix 11	11	B	227	231	Right-handed 310
Helix 12	12	B	232	244	Right-handed alpha
Helix 13	13	B	263	271	Right-handed alpha
Helix 14	14	B	278	297	Right-handed alpha
Helix 15	15	B	297	302	Right-handed alpha
Helix 16	16	B	309	313	Right-handed alpha
Helix 17	17	B	409	413	Right-handed 310
Helix 18	18	B	415	419	Right-handed 310
Helix 19	19	B	453	458	Right-handed alpha
Helix 20	20	B	514	519	Right-handed alpha
Helix 21	21	B	523	530	Right-handed alpha
Helix 22	22	B	534	554	Right-handed alpha
Helix 23	23	B	565	576	Right-handed alpha
Helix 24	24	B	588	606	Right-handed alpha
Helix 25	25	B	607	611	Right-handed 310
Helix 26	26	B	620	637	Right-handed alpha
Helix 27	27	B	643	672	Right-handed alpha
Helix 28	28	C	24	27	Right-handed 310
Helix 29	29	C	37	42	Right-handed alpha
Helix 30	30	D	59	61	Right-handed 310
Helix 31	31	D	68	71	Right-handed 310
Helix 32	32	D	104	120	Right-handed alpha
Helix 33	33	D	121	128	Right-handed alpha
Helix 34	34	D	136	141	Right-handed alpha
Helix 35	35	D	151	157	Right-handed alpha
Helix 36	36	D	167	199	Right-handed alpha
Helix 37	37	D	211	223	Right-handed alpha
Helix 38	38	D	227	231	Right-handed 310
Helix 39	39	D	232	242	Right-handed alpha
Helix 40	40	D	263	271	Right-handed alpha
Helix 41	41	D	278	297	Right-handed alpha
Helix 42	42	D	297	302	Right-handed alpha
Helix 43	43	D	309	313	Right-handed alpha
Helix 44	44	D	409	413	Right-handed 310
Helix 45	45	D	415	419	Right-handed 310
Helix 46	46	D	453	458	Right-handed alpha
Helix 47	47	D	514	519	Right-handed alpha
Helix 48	48	D	523	530	Right-handed alpha
Helix 49	49	D	534	554	Right-handed alpha
Helix 50	50	D	565	576	Right-handed alpha
Helix 51	51	D	588	606	Right-handed alpha
Helix 52	52	D	607	611	Right-handed 310
Helix 53	53	D	620	637	Right-handed alpha
Helix 54	54	D	643	672	Right-handed alpha
Helix 55	55	E	24	27	Right-handed 310
Helix 56	56	E	37	42	Right-handed alpha
Helix 57	57	F	59	61	Right-handed 310
Helix 58	58	F	68	71	Right-handed 310
Helix 59	59	F	104	120	Right-handed alpha
Helix 60	60	F	121	128	Right-handed alpha
Helix 61	61	F	136	141	Right-handed alpha
Helix 62	62	F	151	157	Right-handed alpha
Helix 63	63	F	167	199	Right-handed alpha
Helix 64	64	F	211	223	Right-handed alpha
Helix 65	65	F	227	231	Right-handed 310
Helix 66	66	F	232	242	Right-handed alpha
Helix 67	67	F	263	271	Right-handed alpha
Helix 68	68	F	278	297	Right-handed alpha
Helix 69	69	F	297	302	Right-handed alpha
Helix 70	70	F	309	313	Right-handed alpha
Helix 71	71	F	409	413	Right-handed 310
Helix 72	72	F	415	419	Right-handed 310
Helix 73	73	F	453	458	Right-handed alpha
Helix 74	74	F	514	519	Right-handed alpha
Helix 75	75	F	523	530	Right-handed alpha
Helix 76	76	F	534	554	Right-handed alpha
Helix 77	77	F	565	576	Right-handed alpha
Helix 78	78	F	588	606	Right-handed alpha
Helix 79	79	F	607	611	Right-handed 310
Helix 80	80	F	620	637	Right-handed alpha
Helix 81	81	F	643	672	Right-handed alpha
Helix 82	82	G	7	19	Right-handed alpha
Helix 83	83	G	78	81	Right-handed 310
Helix 84	84	G	82	111	Right-handed alpha
Helix 85	85	G	114	124	Right-handed alpha
Helix 86	86	G	132	136	Right-handed 310
Helix 87	87	G	158	177	Right-handed alpha
Helix 88	88	G	188	193	Right-handed alpha
Helix 89	89	G	198	204	Right-handed 310
Helix 90	90	G	225	231	Right-handed alpha
Helix 91	91	G	232	234	Right-handed 310
Helix 92	92	G	235	243	Right-handed alpha
Helix 93	93	G	245	250	Right-handed alpha
Helix 94	94	G	251	255	Right-handed 310
Helix 95	95	G	274	278	Right-handed 310
Helix 96	96	G	287	293	Right-handed alpha
Helix 97	97	G	295	306	Right-handed alpha
Helix 98	98	G	307	316	Right-handed alpha
Helix 99	99	G	318	331	Right-handed alpha
Helix 100	100	G	330	335	Right-handed alpha
Helix 101	101	G	337	342	Right-handed 310
Helix 102	102	H	7	19	Right-handed alpha
Helix 103	103	H	78	81	Right-handed 310
Helix 104	104	H	82	111	Right-handed alpha
Helix 105	105	H	114	124	Right-handed alpha
Helix 106	106	H	132	136	Right-handed 310
Helix 107	107	H	158	177	Right-handed alpha
Helix 108	108	H	188	193	Right-handed alpha
Helix 109	109	H	198	204	Right-handed 310
Helix 110	110	H	225	231	Right-handed alpha
Helix 111	111	H	232	234	Right-handed 310
Helix 112	112	H	235	243	Right-handed alpha
Helix 113	113	H	245	250	Right-handed alpha
Helix 114	114	H	251	255	Right-handed 310
Helix 115	115	H	274	278	Right-handed 310
Helix 116	116	H	287	293	Right-handed alpha
Helix 117	117	H	295	306	Right-handed alpha
Helix 118	118	H	307	316	Right-handed alpha
Helix 119	119	H	318	331	Right-handed alpha
Helix 120	120	H	330	335	Right-handed alpha
Helix 121	121	H	337	342	Right-handed 310
Helix 122	122	I	7	19	Right-handed alpha
Helix 123	123	I	78	81	Right-handed 310
Helix 124	124	I	82	111	Right-handed alpha
Helix 125	125	I	114	124	Right-handed alpha
Helix 126	126	I	132	136	Right-handed 310
Helix 127	127	I	158	177	Right-handed alpha
Helix 128	128	I	188	193	Right-handed alpha
Helix 129	129	I	198	204	Right-handed 310
Helix 130	130	I	225	231	Right-handed alpha
Helix 131	131	I	232	234	Right-handed 310
Helix 132	132	I	235	243	Right-handed alpha
Helix 133	133	I	245	250	Right-handed alpha
Helix 134	134	I	251	255	Right-handed 310
Helix 135	135	I	274	278	Right-handed 310
Helix 136	136	I	287	293	Right-handed alpha
Helix 137	137	I	295	306	Right-handed alpha
Helix 138	138	I	307	316	Right-handed alpha
Helix 139	139	I	318	331	Right-handed alpha
Helix 140	140	I	330	335	Right-handed alpha
Helix 141	141	I	337	342	Right-handed 310

There are 34 sheets in PDB entry 1JMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	B	247	248	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	142	149	anti-parallel
Strand 4	B	159	166	anti-parallel
Strand 5	B	101	102	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	512	513	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	492	497	anti-parallel
Strand 3	B	376	381	anti-parallel
Strand 4	B	448	452	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	366	369	anti-parallel
Strand 3	B	465	473	anti-parallel
Strand 4	B	398	406	anti-parallel
Strand 5	B	422	429	anti-parallel
Strand 6	B	344	351	parallel
Strand 7	B	356	362	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	434	first strand
Strand 2	B	441	443	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	505	first strand
Strand 2	B	508	510	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	D	247	248	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	65	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	142	149	anti-parallel
Strand 4	D	159	166	anti-parallel
Strand 5	D	101	102	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	512	513	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	492	497	anti-parallel
Strand 3	D	376	381	anti-parallel
Strand 4	D	448	452	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	366	369	anti-parallel
Strand 3	D	465	473	anti-parallel
Strand 4	D	398	406	anti-parallel
Strand 5	D	422	429	anti-parallel
Strand 6	D	344	351	parallel
Strand 7	D	356	362	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	434	first strand
Strand 2	D	441	443	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	505	first strand
Strand 2	D	508	510	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	F	247	248	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	65	first strand
Strand 2	F	46	50	anti-parallel
Strand 3	F	142	149	anti-parallel
Strand 4	F	159	166	anti-parallel
Strand 5	F	101	102	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	308	first strand
Strand 2	F	512	513	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	319	321	first strand
Strand 2	F	492	497	anti-parallel
Strand 3	F	376	381	anti-parallel
Strand 4	F	448	452	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	336	first strand
Strand 2	F	366	369	anti-parallel
Strand 3	F	465	473	anti-parallel
Strand 4	F	398	406	anti-parallel
Strand 5	F	422	429	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	350	first strand
Strand 2	F	356	362	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	432	434	first strand
Strand 2	F	441	443	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	503	505	first strand
Strand 2	F	508	510	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	26	first strand
Strand 2	G	42	45	anti-parallel
Strand 3	G	48	51	anti-parallel
Strand 4	G	57	60	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	130	first strand
Strand 2	G	362	365	anti-parallel
Strand 3	G	180	181	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	184	185	first strand
Strand 2	G	259	261	anti-parallel
Strand 3	G	270	272	anti-parallel
Strand 4	G	282	284	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	221	223	first strand
Strand 2	G	356	358	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	42	45	anti-parallel
Strand 3	H	48	51	anti-parallel
Strand 4	H	57	60	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	362	365	anti-parallel
Strand 3	H	180	181	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	184	185	first strand
Strand 2	H	259	261	anti-parallel
Strand 3	H	270	272	anti-parallel
Strand 4	H	282	284	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	221	223	first strand
Strand 2	H	356	358	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	26	first strand
Strand 2	I	42	45	anti-parallel
Strand 3	I	48	51	anti-parallel
Strand 4	I	57	60	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	130	first strand
Strand 2	I	362	365	anti-parallel
Strand 3	I	180	181	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	184	185	first strand
Strand 2	I	259	261	anti-parallel
Strand 3	I	270	272	anti-parallel
Strand 4	I	282	284	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	221	223	first strand
Strand 2	I	356	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMU