Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMV entry

There are 4 chains in PDB entry 1JMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 140
B
 MET 1ARG 139
C
 MET 1LEU 138
D
 MET 1PRO 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1JMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 30Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
52 58Right-handed alpha
Helix 4
4
A
63 76Right-handed alpha
Helix 5
5
A
89 101Right-handed alpha
Helix 6
6
A
114 127Right-handed alpha
Helix 7
7
B
13 30Right-handed alpha
Helix 8
8
B
62 74Right-handed alpha
Helix 9
9
B
89 102Right-handed alpha
Helix 10
10
B
111 119Right-handed alpha
Helix 11
11
C
14 30Right-handed alpha
Helix 12
12
C
52 57Right-handed alpha
Helix 13
13
C
63 76Right-handed alpha
Helix 14
14
C
89 101Right-handed alpha
Helix 15
15
C
114 127Right-handed alpha
Helix 16
16
D
13 30Right-handed alpha
Helix 17
17
D
65 75Right-handed alpha
Helix 18
18
D
89 101Right-handed alpha
Helix 19
19
D
111 122Right-handed alpha
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There are 2 sheets in PDB entry 1JMV. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
83 88anti-parallel
Strand 3
A
32 40parallel
Strand 4
A
4 9parallel
Strand 5
A
105 110parallel
Strand 6
A
132 137parallel
Strand 7
B
132 135anti-parallel
Strand 8
B
105 108parallel
Strand 9
B
4 9parallel
Strand 10
B
32 38parallel
Strand 11
B
83 87parallel
Strand 12
B
48 51anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
80 88anti-parallel
Strand 3
C
32 40parallel
Strand 4
C
4 8parallel
Strand 5
C
105 110parallel
Strand 6
C
132 137parallel
Strand 7
D
132 135anti-parallel
Strand 8
D
105 108parallel
Strand 9
D
4 9parallel
Strand 10
D
32 38parallel
Strand 11
D
83 87parallel
Strand 12
D
48 51anti-parallel
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