Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMX entry

There are 4 chains in PDB entry 1JMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2PRO 494
B
 GLY 4ARG 349
G
 ALA 3TRP 42
G
 PRO 44LYS 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1JMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
33 49Right-handed alpha
Helix 4
4
A
53 68Right-handed alpha
Helix 5
5
A
71 75Right-handed 310
Helix 6
6
A
93 101Right-handed alpha
Helix 7
7
A
106 111Right-handed alpha
Helix 8
8
A
115 130Right-handed alpha
Helix 9
9
A
131 136Right-handed 310
Helix 10
10
A
143 151Right-handed alpha
Helix 11
11
A
151 160Right-handed alpha
Helix 12
12
A
164 174Right-handed alpha
Helix 13
13
A
176 180Right-handed 310
Helix 14
14
A
422 428Right-handed alpha
Helix 15
15
A
429 434Right-handed alpha
Helix 16
16
A
454 458Right-handed 310
Helix 17
17
B
133 137Right-handed 310
Helix 18
18
G
29 32Right-handed 310
Helix 19
19
G
33 39Right-handed alpha
Helix 20
20
G
63 68Right-handed alpha
Helix 21
21
G
69 71Right-handed 310
Back to top of page

There are 15 sheets in PDB entry 1JMX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
112 113anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 190first strand
Strand 2
A
194 204anti-parallel
Strand 3
A
209 218anti-parallel
Strand 4
A
223 233anti-parallel
Strand 5
A
237 244anti-parallel
Strand 6
A
247 256anti-parallel
Strand 7
A
259 266anti-parallel
Strand 8
A
269 280anti-parallel
Strand 9
A
182 190anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 290first strand
Strand 2
A
299 307anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
319 327anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
354 362parallel
Strand 3
A
345 351anti-parallel
Strand 4
A
313 314anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 371first strand
Strand 2
A
394 400anti-parallel
Strand 3
A
406 411anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
476 484parallel
Strand 3
A
462 470anti-parallel
Strand 4
A
414 420anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
442 445anti-parallel
Strand 3
A
435 437anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 348first strand
Strand 2
B
12 18anti-parallel
Strand 3
B
22 27anti-parallel
Strand 4
B
32 38anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
66 71anti-parallel
Strand 4
B
77 82anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
105 115anti-parallel
Strand 3
B
97 99anti-parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
120 122anti-parallel
Strand 6
B
105 115anti-parallel
Strand 7
B
126 131anti-parallel
Strand 8
B
142 145anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
161 164anti-parallel
Strand 3
B
168 171anti-parallel
Strand 4
B
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 218first strand
Strand 2
B
230 239anti-parallel
Strand 3
B
245 252anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 262first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
276 281anti-parallel
Strand 4
B
286 292anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
309 312anti-parallel
Strand 3
B
317 322anti-parallel
Strand 4
B
327 333anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il