Analysis of interatomic Contacts of Structural Units in PDB entry:
1JMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JMY entry

There is 1 chain in PDB entry 1JMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1HIS 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1JMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
127 134Right-handed alpha
Helix 2
2
A
145 151Right-handed alpha
Helix 3
3
A
161 178Right-handed alpha
Helix 4
4
A
179 181Right-handed 310
Helix 5
5
A
194 206Right-handed alpha
Helix 6
6
A
207 210Right-handed 310
Helix 7
7
A
232 245Right-handed alpha
Helix 8
8
A
250 261Right-handed alpha
Helix 9
9
A
262 268Right-handed alpha
Helix 10
10
A
281 285Right-handed 310
Helix 11
11
A
299 303Right-handed 310
Helix 12
12
A
303 308Right-handed 310
Helix 13
13
A
321 329Right-handed alpha
Helix 14
14
A
330 333Right-handed 310
Helix 15
15
A
341 349Right-handed alpha
Helix 16
16
A
356 367Right-handed alpha
Helix 17
17
A
376 393Right-handed alpha
Helix 18
18
A
393 406Right-handed alpha
Helix 19
19
A
438 443Right-handed alpha
Helix 20
20
A
444 449Right-handed alpha
Helix 21
21
A
450 453Right-handed 310
Helix 22
22
A
454 475Right-handed alpha
Helix 23
23
A
506 508Right-handed 310
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There are 4 sheets in PDB entry 1JMY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
54 56parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
26 34anti-parallel
Strand 3
A
82 89anti-parallel
Strand 4
A
137 141anti-parallel
Strand 5
A
98 104parallel
Strand 6
A
183 193parallel
Strand 7
A
215 219parallel
Strand 8
A
311 317parallel
Strand 9
A
413 418parallel
Strand 10
A
498 501parallel
Strand 11
A
510 511anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
74 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
122 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il