Analysis of interatomic Contacts of Structural Units in PDB entry:
1JND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JND entry

There is 1 chain in PDB entry 1JND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1JND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
22 30Right-handed alpha
Helix 3
3
A
31 33Right-handed 310
Helix 4
4
A
54 59Right-handed alpha
Helix 5
5
A
62 69Right-handed alpha
Helix 6
6
A
70 73Right-handed 310
Helix 7
7
A
95 102Right-handed alpha
Helix 8
8
A
104 122Right-handed alpha
Helix 9
9
A
165 185Right-handed alpha
Helix 10
10
A
200 205Right-handed alpha
Helix 11
11
A
206 212Right-handed alpha
Helix 12
12
A
254 265Right-handed alpha
Helix 13
13
A
268 270Right-handed 310
Helix 14
14
A
286 290Right-handed 310
Helix 15
15
A
318 325Right-handed alpha
Helix 16
16
A
334 338Right-handed 310
Helix 17
17
A
372 386Right-handed alpha
Helix 18
18
A
395 399Right-handed 310
Helix 19
19
A
410 420Right-handed alpha
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There are 2 sheets in PDB entry 1JND. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
35 43anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
390 394parallel
Strand 5
A
272 277parallel
Strand 6
A
216 219parallel
Strand 7
A
190 195parallel
Strand 8
A
126 130parallel
Strand 9
A
78 84parallel
Strand 10
A
35 43parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
366 370anti-parallel
Strand 4
A
352 356anti-parallel
Strand 5
A
341 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il