Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JNF entry

There is 1 chain in PDB entry 1JNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3HIS 676
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1JNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 30Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
63 72Right-handed alpha
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
128 136Right-handed alpha
Helix 6
6
A
137 139Right-handed 310
Helix 7
7
A
145 154Right-handed alpha
Helix 8
8
A
167 172Right-handed 310
Helix 9
9
A
186 197Right-handed alpha
Helix 10
10
A
208 214Right-handed alpha
Helix 11
11
A
216 221Right-handed alpha
Helix 12
12
A
236 238Right-handed 310
Helix 13
13
A
259 275Right-handed alpha
Helix 14
14
A
310 316Right-handed alpha
Helix 15
15
A
316 328Right-handed alpha
Helix 16
16
A
348 363Right-handed alpha
Helix 17
17
A
373 383Right-handed alpha
Helix 18
18
A
392 402Right-handed alpha
Helix 19
19
A
439 443Right-handed 310
Helix 20
20
A
459 471Right-handed alpha
Helix 21
21
A
474 479Right-handed alpha
Helix 22
22
A
491 495Right-handed 310
Helix 23
23
A
512 524Right-handed alpha
Helix 24
24
A
533 539Right-handed alpha
Helix 25
25
A
552 554Right-handed 310
Helix 26
26
A
569 574Right-handed 310
Helix 27
27
A
590 606Right-handed alpha
Helix 28
28
A
643 649Right-handed alpha
Helix 29
29
A
649 659Right-handed alpha
Helix 30
30
A
660 663Right-handed 310
Helix 31
31
A
665 672Right-handed alpha
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There are 8 sheets in PDB entry 1JNF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
36 42parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
301 304anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
117 119parallel
Strand 3
A
202 206parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
223 226anti-parallel
Strand 6
A
232 234anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
117 119parallel
Strand 3
A
202 206parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
244 247anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 347first strand
Strand 2
A
366 371parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
583 586anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
634 637anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
447 450parallel
Strand 3
A
527 531parallel
Strand 4
A
425 432anti-parallel
Strand 5
A
556 559anti-parallel
Strand 6
A
565 567anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
447 450parallel
Strand 3
A
527 531parallel
Strand 4
A
425 432anti-parallel
Strand 5
A
577 579anti-parallel
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