Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JNK entry

There is 1 chain in PDB entry 1JNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 45ASN 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1JNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 100Right-handed 310
Helix 2
2
A
102 117Right-handed alpha
Helix 3
3
A
153 157Right-handed alpha
Helix 4
4
A
163 183Right-handed alpha
Helix 5
5
A
192 194Right-handed 310
Helix 6
6
A
232 235Right-handed alpha
Helix 7
7
A
242 258Right-handed 310
Helix 8
8
A
268 279Right-handed alpha
Helix 9
9
A
287 289Right-handed 310
Helix 10
10
A
292 299Right-handed alpha
Helix 11
11
A
309 312Right-handed alpha
Helix 12
12
A
323 339Right-handed alpha
Helix 13
13
A
350 354Right-handed alpha
Helix 14
14
A
360 362Right-handed 310
Helix 15
15
A
365 368Right-handed alpha
Helix 16
16
A
389 398Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1JNK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
56 61anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
76 83anti-parallel
Strand 5
A
68 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
203 205anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il