Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JNR entry

There are 4 chains in PDB entry 1JNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2PHE 643
B
 PRO 2ALA 150
C
 VAL 2PHE 643
D
 PRO 2ALA 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 1JNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
31 46Right-handed alpha
Helix 3
3
A
88 100Right-handed alpha
Helix 4
4
A
105 126Right-handed alpha
Helix 5
5
A
152 166Right-handed alpha
Helix 6
6
A
227 232Right-handed 310
Helix 7
7
A
241 251Right-handed alpha
Helix 8
8
A
273 279Right-handed alpha
Helix 9
9
A
291 296Right-handed alpha
Helix 10
10
A
297 304Right-handed 310
Helix 11
11
A
305 309Right-handed 310
Helix 12
12
A
313 327Right-handed alpha
Helix 13
13
A
335 345Right-handed alpha
Helix 14
14
A
347 364Right-handed alpha
Helix 15
15
A
366 376Right-handed alpha
Helix 16
16
A
414 419Right-handed alpha
Helix 17
17
A
438 441Right-handed 310
Helix 18
18
A
447 471Right-handed alpha
Helix 19
19
A
477 499Right-handed alpha
Helix 20
20
A
500 502Right-handed 310
Helix 21
21
A
513 529Right-handed alpha
Helix 22
22
A
531 535Right-handed 310
Helix 23
23
A
539 558Right-handed alpha
Helix 24
24
A
564 591Right-handed alpha
Helix 25
25
B
19 25Right-handed alpha
Helix 26
26
B
43 47Right-handed 310
Helix 27
27
B
51 57Right-handed alpha
Helix 28
28
B
122 127Right-handed alpha
Helix 29
29
B
135 139Right-handed 310
Helix 30
30
C
12 16Right-handed 310
Helix 31
31
C
31 45Right-handed alpha
Helix 32
32
C
46 49Right-handed 310
Helix 33
33
C
88 100Right-handed alpha
Helix 34
34
C
105 126Right-handed alpha
Helix 35
35
C
152 166Right-handed alpha
Helix 36
36
C
227 232Right-handed 310
Helix 37
37
C
241 251Right-handed alpha
Helix 38
38
C
273 279Right-handed alpha
Helix 39
39
C
291 296Right-handed alpha
Helix 40
40
C
297 301Right-handed 310
Helix 41
41
C
305 309Right-handed 310
Helix 42
42
C
313 328Right-handed alpha
Helix 43
43
C
335 345Right-handed alpha
Helix 44
44
C
347 364Right-handed alpha
Helix 45
45
C
366 376Right-handed alpha
Helix 46
46
C
414 419Right-handed alpha
Helix 47
47
C
438 441Right-handed 310
Helix 48
48
C
447 471Right-handed alpha
Helix 49
49
C
477 499Right-handed alpha
Helix 50
50
C
500 502Right-handed 310
Helix 51
51
C
513 529Right-handed alpha
Helix 52
52
C
531 535Right-handed 310
Helix 53
53
C
539 558Right-handed alpha
Helix 54
54
C
564 591Right-handed alpha
Helix 55
55
D
19 25Right-handed alpha
Helix 56
56
D
43 47Right-handed 310
Helix 57
57
D
51 57Right-handed alpha
Helix 58
58
D
122 127Right-handed alpha
Helix 59
59
D
135 139Right-handed 310
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There are 18 sheets in PDB entry 1JNR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
202 206parallel
Strand 3
A
189 196anti-parallel
Strand 4
A
174 181anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
52 55parallel
Strand 3
A
25 28parallel
Strand 4
A
209 212parallel
Strand 5
A
434 436parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
146 150anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
254 255anti-parallel
Strand 3
A
615 622anti-parallel
Strand 4
A
627 634anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
332 334anti-parallel
Strand 4
A
284 285anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
601 602parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
62 64anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
38 41anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 81first strand
Strand 2
B
85 91anti-parallel
Strand 3
B
97 103anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 22first strand
Strand 2
C
202 206parallel
Strand 3
C
185 196anti-parallel
Strand 4
C
174 182anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
52 55parallel
Strand 3
C
25 28parallel
Strand 4
C
209 212parallel
Strand 5
C
434 436parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
146 150anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
403 404first strand
Strand 2
C
254 255anti-parallel
Strand 3
C
615 622anti-parallel
Strand 4
C
627 634anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 266first strand
Strand 2
C
385 389anti-parallel
Strand 3
C
332 334anti-parallel
Strand 4
C
284 285anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
537 538first strand
Strand 2
C
601 602parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
62 64anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 33first strand
Strand 2
D
38 41anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 81first strand
Strand 2
D
85 91anti-parallel
Strand 3
D
97 103anti-parallel
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