Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JNU entry

There are 4 chains in PDB entry 1JNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 929MET 1032
B
 LYS 929MET 1032
C
 LYS 929MET 1032
D
 LYS 929MET 1032
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1JNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
947 955Right-handed alpha
Helix 2
2
A
957 962Right-handed alpha
Helix 3
3
A
965 970Right-handed 310
Helix 4
4
A
975 989Right-handed alpha
Helix 5
5
B
947 955Right-handed alpha
Helix 6
6
B
957 962Right-handed alpha
Helix 7
7
B
965 970Right-handed 310
Helix 8
8
B
975 989Right-handed alpha
Helix 9
9
C
947 955Right-handed alpha
Helix 10
10
C
957 962Right-handed alpha
Helix 11
11
C
965 970Right-handed 310
Helix 12
12
C
975 989Right-handed alpha
Helix 13
13
D
947 955Right-handed alpha
Helix 14
14
D
957 962Right-handed alpha
Helix 15
15
D
965 970Right-handed 310
Helix 16
16
D
975 989Right-handed alpha
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There are 4 sheets in PDB entry 1JNU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 946first strand
Strand 2
A
930 934anti-parallel
Strand 3
A
1024 1031anti-parallel
Strand 4
A
1005 1015anti-parallel
Strand 5
A
992 999anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
943 946first strand
Strand 2
B
930 934anti-parallel
Strand 3
B
1024 1031anti-parallel
Strand 4
B
1005 1015anti-parallel
Strand 5
B
992 999anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
943 946first strand
Strand 2
C
930 934anti-parallel
Strand 3
C
1024 1031anti-parallel
Strand 4
C
1005 1015anti-parallel
Strand 5
C
992 999anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
943 946first strand
Strand 2
D
930 934anti-parallel
Strand 3
D
1024 1031anti-parallel
Strand 4
D
1005 1015anti-parallel
Strand 5
D
992 999anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il