Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JNV entry

There are 8 chains in PDB entry 1JNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 24	UNK 510
B	UNK 24	UNK 510
C	UNK 19	UNK 510
D	UNK 9	UNK 475
E	UNK 9	UNK 474
F	UNK 9	UNK 474
Y	UNK 1	UNK 134
Z	UNK 3	UNK 286

There are137 helices in PDB entry 1JNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	78	82	Right-handed 310
Helix 2	2	A	100	104	Right-handed 310
Helix 3	3	A	150	157	Right-handed alpha
Helix 4	4	A	174	186	Right-handed alpha
Helix 5	5	A	186	191	Right-handed alpha
Helix 6	6	A	209	223	Right-handed alpha
Helix 7	7	A	225	227	Right-handed 310
Helix 8	8	A	239	260	Right-handed alpha
Helix 9	9	A	270	285	Right-handed alpha
Helix 10	10	A	290	294	Right-handed 310
Helix 11	11	A	297	307	Right-handed alpha
Helix 12	12	A	313	317	Right-handed 310
Helix 13	13	A	336	346	Right-handed alpha
Helix 14	14	A	353	359	Right-handed alpha
Helix 15	15	A	374	379	Right-handed 310
Helix 16	16	A	380	401	Right-handed alpha
Helix 17	17	A	402	407	Right-handed 310
Helix 18	18	A	411	428	Right-handed alpha
Helix 19	19	A	437	450	Right-handed alpha
Helix 20	20	A	457	459	Right-handed 310
Helix 21	21	A	460	475	Right-handed alpha
Helix 22	22	A	476	486	Right-handed alpha
Helix 23	23	A	490	509	Right-handed alpha
Helix 24	24	B	100	104	Right-handed 310
Helix 25	25	B	150	157	Right-handed alpha
Helix 26	26	B	174	186	Right-handed alpha
Helix 27	27	B	186	191	Right-handed alpha
Helix 28	28	B	194	198	Right-handed 310
Helix 29	29	B	209	223	Right-handed alpha
Helix 30	30	B	225	227	Right-handed 310
Helix 31	31	B	239	260	Right-handed alpha
Helix 32	32	B	270	285	Right-handed alpha
Helix 33	33	B	290	294	Right-handed 310
Helix 34	34	B	297	308	Right-handed alpha
Helix 35	35	B	313	317	Right-handed 310
Helix 36	36	B	336	344	Right-handed alpha
Helix 37	37	B	353	359	Right-handed alpha
Helix 38	38	B	380	399	Right-handed alpha
Helix 39	39	B	411	429	Right-handed alpha
Helix 40	40	B	437	450	Right-handed alpha
Helix 41	41	B	457	459	Right-handed 310
Helix 42	42	B	460	475	Right-handed alpha
Helix 43	43	B	476	487	Right-handed alpha
Helix 44	44	B	490	508	Right-handed alpha
Helix 45	45	C	78	82	Right-handed 310
Helix 46	46	C	100	104	Right-handed 310
Helix 47	47	C	150	157	Right-handed alpha
Helix 48	48	C	174	186	Right-handed alpha
Helix 49	49	C	186	191	Right-handed alpha
Helix 50	50	C	209	223	Right-handed alpha
Helix 51	51	C	224	224	Right-handed 310
Helix 52	52	C	225	227	Right-handed 310
Helix 53	53	C	239	260	Right-handed alpha
Helix 54	54	C	270	285	Right-handed alpha
Helix 55	55	C	290	294	Right-handed 310
Helix 56	56	C	297	307	Right-handed alpha
Helix 57	57	C	313	317	Right-handed 310
Helix 58	58	C	336	344	Right-handed alpha
Helix 59	59	C	353	360	Right-handed alpha
Helix 60	60	C	374	379	Right-handed 310
Helix 61	61	C	380	388	Right-handed alpha
Helix 62	62	C	389	404	Right-handed alpha
Helix 63	63	C	412	428	Right-handed alpha
Helix 64	64	C	437	450	Right-handed alpha
Helix 65	65	C	457	459	Right-handed 310
Helix 66	66	C	460	475	Right-handed alpha
Helix 67	67	C	476	487	Right-handed alpha
Helix 68	68	C	490	509	Right-handed alpha
Helix 69	69	D	87	90	Right-handed 310
Helix 70	70	D	122	125	Right-handed 310
Helix 71	71	D	137	144	Right-handed alpha
Helix 72	72	D	161	173	Right-handed alpha
Helix 73	73	D	189	203	Right-handed alpha
Helix 74	74	D	225	246	Right-handed alpha
Helix 75	75	D	258	270	Right-handed alpha
Helix 76	76	D	271	273	Right-handed 310
Helix 77	77	D	277	281	Right-handed 310
Helix 78	78	D	284	294	Right-handed alpha
Helix 79	79	D	313	316	Right-handed 310
Helix 80	80	D	319	326	Right-handed alpha
Helix 81	81	D	327	329	Right-handed 310
Helix 82	82	D	336	341	Right-handed alpha
Helix 83	83	D	359	364	Right-handed alpha
Helix 84	84	D	364	392	Right-handed alpha
Helix 85	85	D	399	414	Right-handed alpha
Helix 86	86	D	421	426	Right-handed alpha
Helix 87	87	D	433	446	Right-handed alpha
Helix 88	88	D	453	458	Right-handed alpha
Helix 89	89	D	462	474	Right-handed alpha
Helix 90	90	E	87	91	Right-handed 310
Helix 91	91	E	137	144	Right-handed alpha
Helix 92	92	E	161	178	Right-handed alpha
Helix 93	93	E	189	203	Right-handed alpha
Helix 94	94	E	225	246	Right-handed alpha
Helix 95	95	E	257	272	Right-handed alpha
Helix 96	96	E	277	281	Right-handed 310
Helix 97	97	E	284	294	Right-handed alpha
Helix 98	98	E	312	316	Right-handed 310
Helix 99	99	E	319	327	Right-handed alpha
Helix 100	100	E	336	342	Right-handed alpha
Helix 101	101	E	363	392	Right-handed alpha
Helix 102	102	E	399	414	Right-handed alpha
Helix 103	103	E	418	420	Right-handed 310
Helix 104	104	E	421	426	Right-handed alpha
Helix 105	105	E	433	447	Right-handed alpha
Helix 106	106	E	453	457	Right-handed 310
Helix 107	107	E	462	473	Right-handed alpha
Helix 108	108	F	87	91	Right-handed 310
Helix 109	109	F	122	126	Right-handed 310
Helix 110	110	F	137	144	Right-handed alpha
Helix 111	111	F	161	173	Right-handed alpha
Helix 112	112	F	189	203	Right-handed alpha
Helix 113	113	F	225	247	Right-handed alpha
Helix 114	114	F	258	270	Right-handed alpha
Helix 115	115	F	277	281	Right-handed 310
Helix 116	116	F	284	294	Right-handed alpha
Helix 117	117	F	313	316	Right-handed 310
Helix 118	118	F	319	324	Right-handed alpha
Helix 119	119	F	325	329	Right-handed 310
Helix 120	120	F	336	342	Right-handed alpha
Helix 121	121	F	359	364	Right-handed alpha
Helix 122	122	F	364	392	Right-handed alpha
Helix 123	123	F	397	414	Right-handed alpha
Helix 124	124	F	418	420	Right-handed 310
Helix 125	125	F	421	426	Right-handed alpha
Helix 126	126	F	433	446	Right-handed alpha
Helix 127	127	F	453	458	Right-handed alpha
Helix 128	128	F	462	474	Right-handed alpha
Helix 129	129	Y	86	103	Right-handed alpha
Helix 130	130	Y	113	134	Right-handed alpha
Helix 131	131	Z	3	57	Right-handed alpha
Helix 132	132	Z	65	69	Right-handed 310
Helix 133	133	Z	90	109	Right-handed alpha
Helix 134	134	Z	119	130	Right-handed alpha
Helix 135	135	Z	149	162	Right-handed alpha
Helix 136	136	Z	211	248	Right-handed alpha
Helix 137	137	Z	249	286	Right-handed alpha

There are 23 sheets in PDB entry 1JNV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	75	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	28	35	anti-parallel
Strand 4	A	87	90	anti-parallel
Strand 5	A	52	55	anti-parallel
Strand 6	A	60	67	anti-parallel
Strand 7	E	10	17	anti-parallel
Strand 8	E	20	25	anti-parallel
Strand 9	E	57	62	anti-parallel
Strand 10	E	46	52	anti-parallel
Strand 11	E	35	38	anti-parallel
Strand 12	E	74	80	anti-parallel
Strand 13	E	10	17	anti-parallel
Strand 14	A	60	67	anti-parallel
Strand 15	A	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	126	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	159	160	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	348	351	anti-parallel
Strand 3	A	164	169	parallel
Strand 4	A	320	328	parallel
Strand 5	A	263	269	parallel
Strand 6	A	199	206	parallel
Strand 7	A	229	234	parallel
Strand 8	A	106	108	parallel

Back to list of sheets
Back to top of page

There are 15 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	62	first strand
Strand 2	F	20	25	parallel
Strand 3	F	10	17	anti-parallel
Strand 4	B	60	67	anti-parallel
Strand 5	B	70	75	anti-parallel
Strand 6	B	38	43	anti-parallel
Strand 7	B	28	35	anti-parallel
Strand 8	B	87	94	anti-parallel
Strand 9	B	51	55	anti-parallel
Strand 10	B	60	67	anti-parallel
Strand 11	F	10	17	anti-parallel
Strand 12	F	74	77	anti-parallel
Strand 13	F	35	38	anti-parallel
Strand 14	F	46	54	anti-parallel
Strand 15	F	57	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	229	234	parallel
Strand 3	B	200	206	parallel
Strand 4	B	263	269	parallel
Strand 5	B	320	328	parallel
Strand 6	B	310	311	anti-parallel
Strand 7	B	320	328	anti-parallel
Strand 8	B	166	169	parallel
Strand 9	B	348	351	parallel
Strand 10	B	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	75	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	28	35	anti-parallel
Strand 4	C	87	94	anti-parallel
Strand 5	C	51	55	anti-parallel
Strand 6	C	60	66	anti-parallel
Strand 7	C	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	229	234	parallel
Strand 3	C	200	206	parallel
Strand 4	C	263	269	parallel
Strand 5	C	320	328	parallel
Strand 6	C	166	169	parallel
Strand 7	C	348	352	parallel
Strand 8	C	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	159	160	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	62	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	10	17	anti-parallel
Strand 4	D	74	81	anti-parallel
Strand 5	D	34	38	anti-parallel
Strand 6	D	46	52	anti-parallel
Strand 7	D	57	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	216	220	parallel
Strand 3	D	181	186	parallel
Strand 4	D	250	256	parallel
Strand 5	D	303	311	parallel
Strand 6	D	151	156	parallel
Strand 7	D	331	334	parallel
Strand 8	D	354	355	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	86	first strand
Strand 2	E	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	215	221	parallel
Strand 3	E	181	188	parallel
Strand 4	E	250	256	parallel
Strand 5	E	303	309	parallel
Strand 6	E	151	155	parallel
Strand 7	E	331	334	parallel
Strand 8	E	354	355	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	86	first strand
Strand 2	F	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	133	first strand
Strand 2	F	146	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	215	220	parallel
Strand 3	F	180	186	parallel
Strand 4	F	250	256	parallel
Strand 5	F	303	311	parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	355	first strand
Strand 2	F	331	334	anti-parallel
Strand 3	F	151	156	parallel
Strand 4	F	303	311	parallel

Back to list of sheets
Back to top of page

There are 10 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	59	64	first strand
Strand 2	Y	48	54	anti-parallel
Strand 3	Y	14	26	anti-parallel
Strand 4	Y	31	35	anti-parallel
Strand 5	Y	14	26	anti-parallel
Strand 6	Y	4	10	anti-parallel
Strand 7	Y	75	80	parallel
Strand 8	Y	67	72	anti-parallel
Strand 9	Y	41	45	anti-parallel
Strand 10	Z	207	209	parallel

Back to list of sheets
Back to top of page

There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	180	189	first strand
Strand 2	Z	168	177	anti-parallel
Strand 3	Z	75	81	parallel
Strand 4	Z	112	118	parallel
Strand 5	Z	132	137	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNV