Analysis of interatomic Contacts of Structural Units in PDB entry:
1JO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JO9 entry

There is 1 chain in PDB entry 1JO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1ASP 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed alpha
Helix 2
2
A
50 57Right-handed alpha
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
70 81Right-handed alpha
Helix 5
5
A
97 111Right-handed alpha
Helix 6
6
A
122 138Right-handed alpha
Helix 7
7
A
145 157Right-handed alpha
Helix 8
8
A
157 162Right-handed alpha
Helix 9
9
A
179 187Right-handed alpha
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
A
197 206Right-handed alpha
Helix 12
12
A
212 225Right-handed alpha
Helix 13
13
A
240 253Right-handed alpha
Helix 14
14
A
255 271Right-handed alpha
Helix 15
15
A
274 289Right-handed alpha
Helix 16
16
A
295 299Right-handed 310
Helix 17
17
A
303 317Right-handed alpha
Helix 18
18
A
348 353Right-handed alpha
Helix 19
19
A
354 359Right-handed 310
Helix 20
20
A
366 371Right-handed 310
Helix 21
21
A
396 401Right-handed alpha
Helix 22
22
A
401 414Right-handed alpha
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There are 4 sheets in PDB entry 1JO9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
27 29anti-parallel
Strand 3
A
345 347parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
326 327anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
393 394anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 419first strand
Strand 2
A
445 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il