Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOA entry

There are 2 chains in PDB entry 1JOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 41
A
 GLY 43ARG 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1JOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
44 48Right-handed alpha
Helix 3
3
A
55 57Right-handed 310
Helix 4
4
A
63 69Right-handed alpha
Helix 5
5
A
133 145Right-handed alpha
Helix 6
6
A
159 170Right-handed alpha
Helix 7
7
A
191 204Right-handed alpha
Helix 8
8
A
249 251Right-handed 310
Helix 9
9
A
280 282Right-handed 310
Helix 10
10
A
288 290Right-handed 310
Helix 11
11
A
299 311Right-handed alpha
Helix 12
12
A
343 349Right-handed alpha
Helix 13
13
A
398 409Right-handed 310
Helix 14
14
A
414 418Right-handed alpha
Helix 15
15
A
434 445Right-handed alpha
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There are 7 sheets in PDB entry 1JOA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
106 109parallel
Strand 3
A
2 6parallel
Strand 4
A
27 31parallel
Strand 5
A
71 74parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
77 83anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
244 246anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
237 240parallel
Strand 3
A
151 155parallel
Strand 4
A
174 179parallel
Strand 5
A
206 210parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
214 218anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
292 294anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 331first strand
Strand 2
A
334 340anti-parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
372 379anti-parallel
Strand 5
A
354 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il