Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOD entry

There are 2 chains in PDB entry 1JOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 104LEU 263
B
 ASP 1104LEU 1263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1JOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
118 130Right-handed alpha
Helix 2
2
A
131 136Right-handed alpha
Helix 3
3
A
196 198Right-handed 310
Helix 4
4
A
218 236Right-handed alpha
Helix 5
5
A
250 252Right-handed 310
Helix 6
6
B
1118 1136Right-handed alpha
Helix 7
7
B
1218 1236Right-handed alpha
Helix 8
8
B
1250 1252Right-handed 310
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There are 3 sheets in PDB entry 1JOD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
254 262anti-parallel
Strand 3
A
109 117anti-parallel
Strand 4
A
150 156anti-parallel
Strand 5
A
238 245anti-parallel
Strand 6
A
176 181anti-parallel
Strand 7
A
204 208anti-parallel
Strand 8
A
215 217anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1109 1114first strand
Strand 2
B
1254 1262anti-parallel
Strand 3
B
1167 1172anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1116 1117first strand
Strand 2
B
1150 1156anti-parallel
Strand 3
B
1238 1245anti-parallel
Strand 4
B
1176 1181anti-parallel
Strand 5
B
1204 1208anti-parallel
Strand 6
B
1215 1217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il