Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOE entry

There are 4 chains in PDB entry 1JOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9ASN 156
B
 VAL 9ASN 156
C
 VAL 9ASN 156
D
 VAL 9ASN 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1JOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
49 66Right-handed alpha
Helix 3
3
A
96 102Right-handed alpha
Helix 4
4
A
102 112Right-handed alpha
Helix 5
5
A
135 150Right-handed alpha
Helix 6
6
B
51 68Right-handed alpha
Helix 7
7
B
96 113Right-handed alpha
Helix 8
8
B
116 120Right-handed 310
Helix 9
9
B
135 150Right-handed alpha
Helix 10
10
C
51 68Right-handed alpha
Helix 11
11
C
96 114Right-handed alpha
Helix 12
12
C
116 120Right-handed 310
Helix 13
13
C
135 150Right-handed alpha
Helix 14
14
D
49 69Right-handed alpha
Helix 15
15
D
96 114Right-handed alpha
Helix 16
16
D
116 120Right-handed 310
Helix 17
17
D
135 150Right-handed alpha
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There are 6 sheets in PDB entry 1JOE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 80first strand
Strand 2
A
86 92anti-parallel
Strand 3
A
32 39anti-parallel
Strand 4
A
18 26anti-parallel
Strand 5
A
152 154parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
152 153parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
74 80anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
152 153parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 26first strand
Strand 2
C
32 39anti-parallel
Strand 3
C
86 92anti-parallel
Strand 4
C
74 80anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 80first strand
Strand 2
D
86 92anti-parallel
Strand 3
D
32 39anti-parallel
Strand 4
D
18 26anti-parallel
Strand 5
D
152 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il