Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JOF entry

There are 8 chains in PDB entry 1JOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	ASP 365
B	PRO 1	ASP 365
C	PRO 1	ASP 365
D	PRO 1	ASP 365
E	PRO 1	ASP 365
F	PRO 1	ASP 365
G	PRO 1	ASP 365
H	PRO 1	ASP 365

There are 8 helices in PDB entry 1JOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	84	89	Right-handed 310
Helix 2	2	B	84	89	Right-handed 310
Helix 3	3	C	84	89	Right-handed 310
Helix 4	4	D	84	89	Right-handed 310
Helix 5	5	E	84	89	Right-handed 310
Helix 6	6	F	84	89	Right-handed 310
Helix 7	7	G	84	89	Right-handed 310
Helix 8	8	H	84	89	Right-handed 310

There are 56 sheets in PDB entry 1JOF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	35	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	2	9	anti-parallel
Strand 4	A	357	364	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	61	69	anti-parallel
Strand 4	A	72	80	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	101	first strand
Strand 2	A	109	114	anti-parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	132	140	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	152	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	168	174	anti-parallel
Strand 4	A	180	187	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	200	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	216	222	anti-parallel
Strand 4	A	229	237	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	262	first strand
Strand 2	A	268	275	anti-parallel
Strand 3	A	283	289	anti-parallel
Strand 4	A	295	303	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	333	340	anti-parallel
Strand 4	A	343	351	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	35	first strand
Strand 2	B	15	22	anti-parallel
Strand 3	B	2	9	anti-parallel
Strand 4	B	357	364	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	53	58	anti-parallel
Strand 3	B	61	69	anti-parallel
Strand 4	B	72	80	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	109	114	anti-parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	132	140	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	152	first strand
Strand 2	B	158	163	anti-parallel
Strand 3	B	168	174	anti-parallel
Strand 4	B	180	187	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	200	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	216	222	anti-parallel
Strand 4	B	229	237	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	262	first strand
Strand 2	B	268	275	anti-parallel
Strand 3	B	283	289	anti-parallel
Strand 4	B	295	303	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	333	340	anti-parallel
Strand 4	B	343	351	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	35	first strand
Strand 2	C	15	22	anti-parallel
Strand 3	C	2	9	anti-parallel
Strand 4	C	357	364	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	61	69	anti-parallel
Strand 4	C	72	80	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	101	first strand
Strand 2	C	109	114	anti-parallel
Strand 3	C	122	126	anti-parallel
Strand 4	C	132	137	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	152	first strand
Strand 2	C	158	163	anti-parallel
Strand 3	C	168	174	anti-parallel
Strand 4	C	180	187	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	200	first strand
Strand 2	C	206	211	anti-parallel
Strand 3	C	216	222	anti-parallel
Strand 4	C	229	237	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	262	first strand
Strand 2	C	268	275	anti-parallel
Strand 3	C	283	289	anti-parallel
Strand 4	C	295	303	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	323	327	anti-parallel
Strand 3	C	333	340	anti-parallel
Strand 4	C	343	351	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	35	first strand
Strand 2	D	15	22	anti-parallel
Strand 3	D	2	9	anti-parallel
Strand 4	D	357	364	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	47	first strand
Strand 2	D	53	58	anti-parallel
Strand 3	D	61	69	anti-parallel
Strand 4	D	72	80	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	101	first strand
Strand 2	D	109	114	anti-parallel
Strand 3	D	122	126	anti-parallel
Strand 4	D	132	137	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	152	first strand
Strand 2	D	158	163	anti-parallel
Strand 3	D	168	174	anti-parallel
Strand 4	D	180	187	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	200	first strand
Strand 2	D	206	211	anti-parallel
Strand 3	D	216	222	anti-parallel
Strand 4	D	229	237	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	262	first strand
Strand 2	D	268	275	anti-parallel
Strand 3	D	283	289	anti-parallel
Strand 4	D	295	303	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	323	327	anti-parallel
Strand 3	D	333	340	anti-parallel
Strand 4	D	343	351	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	35	first strand
Strand 2	E	15	22	anti-parallel
Strand 3	E	2	9	anti-parallel
Strand 4	E	357	364	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	53	58	anti-parallel
Strand 3	E	61	69	anti-parallel
Strand 4	E	72	80	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	101	first strand
Strand 2	E	109	114	anti-parallel
Strand 3	E	122	126	anti-parallel
Strand 4	E	132	137	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	152	first strand
Strand 2	E	158	163	anti-parallel
Strand 3	E	168	174	anti-parallel
Strand 4	E	180	187	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	200	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	216	222	anti-parallel
Strand 4	E	229	237	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	262	first strand
Strand 2	E	268	275	anti-parallel
Strand 3	E	283	289	anti-parallel
Strand 4	E	295	303	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	316	first strand
Strand 2	E	323	327	anti-parallel
Strand 3	E	333	340	anti-parallel
Strand 4	E	343	351	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	35	first strand
Strand 2	F	15	22	anti-parallel
Strand 3	F	2	9	anti-parallel
Strand 4	F	357	364	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	53	58	anti-parallel
Strand 3	F	61	69	anti-parallel
Strand 4	F	72	80	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	101	first strand
Strand 2	F	109	114	anti-parallel
Strand 3	F	122	126	anti-parallel
Strand 4	F	132	137	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	152	first strand
Strand 2	F	158	163	anti-parallel
Strand 3	F	168	174	anti-parallel
Strand 4	F	180	187	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	200	first strand
Strand 2	F	206	211	anti-parallel
Strand 3	F	216	222	anti-parallel
Strand 4	F	229	237	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	262	first strand
Strand 2	F	268	275	anti-parallel
Strand 3	F	283	289	anti-parallel
Strand 4	F	295	303	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	316	first strand
Strand 2	F	323	327	anti-parallel
Strand 3	F	333	340	anti-parallel
Strand 4	F	343	351	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	35	first strand
Strand 2	G	15	22	anti-parallel
Strand 3	G	2	9	anti-parallel
Strand 4	G	357	364	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	47	first strand
Strand 2	G	53	58	anti-parallel
Strand 3	G	61	69	anti-parallel
Strand 4	G	72	80	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	101	first strand
Strand 2	G	109	114	anti-parallel
Strand 3	G	122	126	anti-parallel
Strand 4	G	132	137	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	152	first strand
Strand 2	G	158	163	anti-parallel
Strand 3	G	168	174	anti-parallel
Strand 4	G	180	187	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	200	first strand
Strand 2	G	206	211	anti-parallel
Strand 3	G	216	222	anti-parallel
Strand 4	G	229	237	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	255	262	first strand
Strand 2	G	268	275	anti-parallel
Strand 3	G	283	289	anti-parallel
Strand 4	G	295	303	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	314	316	first strand
Strand 2	G	323	327	anti-parallel
Strand 3	G	333	340	anti-parallel
Strand 4	G	343	351	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	35	first strand
Strand 2	H	15	22	anti-parallel
Strand 3	H	2	9	anti-parallel
Strand 4	H	357	364	anti-parallel

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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	53	58	anti-parallel
Strand 3	H	61	69	anti-parallel
Strand 4	H	72	80	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	101	first strand
Strand 2	H	109	114	anti-parallel
Strand 3	H	122	126	anti-parallel
Strand 4	H	132	137	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	152	first strand
Strand 2	H	158	163	anti-parallel
Strand 3	H	168	174	anti-parallel
Strand 4	H	180	187	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	200	first strand
Strand 2	H	206	211	anti-parallel
Strand 3	H	216	222	anti-parallel
Strand 4	H	229	237	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	255	262	first strand
Strand 2	H	268	275	anti-parallel
Strand 3	H	283	289	anti-parallel
Strand 4	H	295	303	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	314	316	first strand
Strand 2	H	323	327	anti-parallel
Strand 3	H	333	340	anti-parallel
Strand 4	H	343	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOF