Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOP entry

There are 4 chains in PDB entry 1JOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 155
B
 MET 1ILE 155
C
 MET 1ILE 155
D
 MET 1ILE 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1JOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
89 93Right-handed 310
Helix 4
4
A
153 155Right-handed 310
Helix 5
5
B
16 26Right-handed alpha
Helix 6
6
B
27 29Right-handed 310
Helix 7
7
B
89 93Right-handed 310
Helix 8
8
B
153 155Right-handed 310
Helix 9
9
C
16 28Right-handed alpha
Helix 10
10
C
153 155Right-handed 310
Helix 11
11
D
16 28Right-handed alpha
Helix 12
12
D
153 155Right-handed 310
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There are 12 sheets in PDB entry 1JOP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
120 124anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
144 151anti-parallel
Strand 5
A
46 50anti-parallel
Strand 6
A
37 40anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
103 105anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
130 134anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
120 124anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
144 151anti-parallel
Strand 5
B
46 50anti-parallel
Strand 6
B
37 40anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
103 105anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
130 131anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
120 124anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
144 151anti-parallel
Strand 5
C
46 50anti-parallel
Strand 6
C
37 40anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
103 105anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 116first strand
Strand 2
C
79 83anti-parallel
Strand 3
C
130 131anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
120 124anti-parallel
Strand 3
D
68 76anti-parallel
Strand 4
D
144 151anti-parallel
Strand 5
D
46 50anti-parallel
Strand 6
D
37 40anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
103 105anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 116first strand
Strand 2
D
79 83anti-parallel
Strand 3
D
130 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il