Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOU entry

There are 6 chains in PDB entry 1JOU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLY 14
B
 ILE 16GLU 247
C
 THR 1ARG 15
D
 ILE 16PHE 245
E
 SER 1ARG 15
F
 ILE 16GLU 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1JOU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 1Right-handed alpha
Helix 2
2
A
7 11Right-handed 310
Helix 3
3
A
14 14Right-handed alpha
Helix 4
4
B
55 59Right-handed alpha
Helix 5
5
B
60 60Right-handed 310
Helix 6
6
B
60 62Right-handed 310
Helix 7
7
B
125 130Right-handed alpha
Helix 8
8
B
164 171Right-handed alpha
Helix 9
9
B
185 186Right-handed 310
Helix 10
10
B
234 246Right-handed alpha
Helix 11
11
C
1 1Right-handed 310
Helix 12
12
C
7 11Right-handed 310
Helix 13
13
C
14 14Right-handed alpha
Helix 14
14
D
55 60Right-handed alpha
Helix 15
15
D
60 60Right-handed 310
Helix 16
16
D
60 62Right-handed 310
Helix 17
17
D
125 130Right-handed alpha
Helix 18
18
D
164 170Right-handed alpha
Helix 19
19
D
234 245Right-handed alpha
Helix 20
20
E
1 1Right-handed 310
Helix 21
21
E
7 11Right-handed 310
Helix 22
22
E
14 14Right-handed alpha
Helix 23
23
F
55 58Right-handed 310
Helix 24
24
F
60 60Right-handed 310
Helix 25
25
F
60 62Right-handed 310
Helix 26
26
F
125 130Right-handed alpha
Helix 27
27
F
164 171Right-handed alpha
Helix 28
28
F
185 186Right-handed 310
Helix 29
29
F
234 246Right-handed alpha
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There are 6 sheets in PDB entry 1JOU. Click on sheet of interest to get list of strands forming it: A, B, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 202anti-parallel
Strand 5
B
207 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
64 68anti-parallel
Strand 7
B
30 35anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 202anti-parallel
Strand 5
D
207 215anti-parallel
Strand 6
D
226 230anti-parallel
Strand 7
D
180 183anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 35first strand
Strand 2
D
39 46anti-parallel
Strand 3
D
51 54anti-parallel
Strand 4
D
104 108anti-parallel
Strand 5
D
81 90anti-parallel
Strand 6
D
64 68anti-parallel
Strand 7
D
30 35anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
20 21first strand
Strand 2
F
156 161anti-parallel
Strand 3
F
135 140anti-parallel
Strand 4
F
198 202anti-parallel
Strand 5
F
207 215anti-parallel
Strand 6
F
226 230anti-parallel
Strand 7
F
180 183anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
30 35first strand
Strand 2
F
39 46anti-parallel
Strand 3
F
51 54anti-parallel
Strand 4
F
104 108anti-parallel
Strand 5
F
81 90anti-parallel
Strand 6
F
64 68anti-parallel
Strand 7
F
30 35anti-parallel
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