Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOV entry

There is 1 chain in PDB entry 1JOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1JOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 84Right-handed 310
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
157 159Right-handed 310
Helix 4
4
A
239 242Right-handed 310
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There are 4 sheets in PDB entry 1JOV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
A
41 47anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
222 227anti-parallel
Strand 5
A
244 256anti-parallel
Strand 6
A
145 149anti-parallel
Strand 7
A
75 76anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
222 227anti-parallel
Strand 5
A
244 256anti-parallel
Strand 6
A
152 154anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 104first strand
Strand 2
A
107 115anti-parallel
Strand 3
A
121 129anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
261 269anti-parallel
Strand 6
A
211 218anti-parallel
Strand 7
A
201 206anti-parallel
Strand 8
A
161 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il