Analysis of interatomic Contacts of Structural Units in PDB entry:
1JOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JOW entry

There are 2 chains in PDB entry 1JOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9LEU 254
B
 ASP 10PHE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1JOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
23 32Right-handed alpha
Helix 3
3
A
48 66Right-handed alpha
Helix 4
4
A
72 87Right-handed alpha
Helix 5
5
A
90 110Right-handed alpha
Helix 6
6
A
116 121Right-handed alpha
Helix 7
7
A
130 144Right-handed alpha
Helix 8
8
A
151 154Right-handed 310
Helix 9
9
A
155 163Right-handed alpha
Helix 10
10
A
166 168Right-handed 310
Helix 11
11
A
169 185Right-handed alpha
Helix 12
12
A
189 193Right-handed 310
Helix 13
13
A
194 208Right-handed alpha
Helix 14
14
A
217 229Right-handed alpha
Helix 15
15
A
231 248Right-handed alpha
Helix 16
16
A
250 254Right-handed 310
Helix 17
17
B
56 69Right-handed alpha
Helix 18
18
B
70 72Right-handed 310
Helix 19
19
B
105 111Right-handed alpha
Helix 20
20
B
118 139Right-handed alpha
Helix 21
21
B
147 149Right-handed 310
Helix 22
22
B
182 186Right-handed 310
Helix 23
23
B
187 192Right-handed alpha
Helix 24
24
B
198 214Right-handed alpha
Helix 25
25
B
223 236Right-handed alpha
Helix 26
26
B
261 265Right-handed 310
Helix 27
27
B
270 281Right-handed alpha
Helix 28
28
B
290 295Right-handed alpha
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There are 5 sheets in PDB entry 1JOW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
B
175 176anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
31 32anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
42 43anti-parallel
Strand 3
B
96 98anti-parallel
Strand 4
B
79 82anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
151 153anti-parallel
Strand 3
B
159 161anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
168 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il