Analysis of interatomic Contacts of Structural Units in PDB entry:
1JP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JP4 entry

There is 1 chain in PDB entry 1JP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5PRO 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1JP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 33Right-handed alpha
Helix 2
2
A
48 66Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
101 105Right-handed 310
Helix 6
6
A
108 110Right-handed 310
Helix 7
7
A
121 127Right-handed alpha
Helix 8
8
A
129 133Right-handed 310
Helix 9
9
A
200 209Right-handed alpha
Helix 10
10
A
220 230Right-handed alpha
Helix 11
11
A
244 258Right-handed alpha
Helix 12
12
A
290 298Right-handed alpha
Helix 13
13
A
299 306Right-handed alpha
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There are 3 sheets in PDB entry 1JP4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
45 47anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
112 120parallel
Strand 3
A
134 141anti-parallel
Strand 4
A
144 152anti-parallel
Strand 5
A
167 172anti-parallel
Strand 6
A
176 178anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
191 195parallel
Strand 3
A
235 238parallel
Strand 4
A
284 287anti-parallel
Strand 5
A
261 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il