Analysis of interatomic Contacts of Structural Units in PDB entry:
1JP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JP5 entry

There are 4 chains in PDB entry 1JP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 247
B
 ASP 1SER 247
C
 PRO 1TRP 6
D
 PRO 1TRP 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1JP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 88Right-handed 310
Helix 2
2
A
189 192Right-handed 310
Helix 3
3
A
214 218Right-handed 310
Helix 4
4
A
228 231Right-handed 310
Helix 5
5
B
84 88Right-handed 310
Helix 6
6
B
189 192Right-handed 310
Helix 7
7
B
214 218Right-handed 310
Helix 8
8
B
228 231Right-handed 310
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There are 12 sheets in PDB entry 1JP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
67 72anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
102 103anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
107 111anti-parallel
Strand 6
A
10 13parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
195 200anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
219 227anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
172 178anti-parallel
Strand 5
A
185 187anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
219 227anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
137 139parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
67 72anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
49 54anti-parallel
Strand 3
B
38 43anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
102 103anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
49 54anti-parallel
Strand 3
B
38 43anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
107 111anti-parallel
Strand 6
B
10 13parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
145 152anti-parallel
Strand 3
B
205 210anti-parallel
Strand 4
B
195 200anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 237first strand
Strand 2
B
219 227anti-parallel
Strand 3
B
161 166anti-parallel
Strand 4
B
172 178anti-parallel
Strand 5
B
185 187anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 237first strand
Strand 2
B
219 227anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
137 139parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il