Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPA entry

There are 2 chains in PDB entry 1JPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 602ALA 900
B
 LYS 602LYS 899
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1JPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
606 610Right-handed 310
Helix 2
2
A
612 621Right-handed alpha
Helix 3
3
A
625 627Right-handed 310
Helix 4
4
A
668 683Right-handed alpha
Helix 5
5
A
715 721Right-handed alpha
Helix 6
6
A
727 748Right-handed alpha
Helix 7
7
A
756 758Right-handed 310
Helix 8
8
A
797 801Right-handed 310
Helix 9
9
A
802 808Right-handed alpha
Helix 10
10
A
812 829Right-handed alpha
Helix 11
11
A
839 849Right-handed alpha
Helix 12
12
A
860 871Right-handed alpha
Helix 13
13
A
880 894Right-handed alpha
Helix 14
14
A
895 899Right-handed 310
Helix 15
15
B
606 610Right-handed 310
Helix 16
16
B
612 621Right-handed alpha
Helix 17
17
B
625 627Right-handed 310
Helix 18
18
B
668 683Right-handed alpha
Helix 19
19
B
714 721Right-handed alpha
Helix 20
20
B
727 748Right-handed alpha
Helix 21
21
B
756 758Right-handed 310
Helix 22
22
B
797 801Right-handed 310
Helix 23
23
B
802 808Right-handed alpha
Helix 24
24
B
812 829Right-handed alpha
Helix 25
25
B
842 849Right-handed alpha
Helix 26
26
B
860 871Right-handed alpha
Helix 27
27
B
874 878Right-handed 310
Helix 28
28
B
880 894Right-handed alpha
Helix 29
29
B
895 899Right-handed 310
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There are 4 sheets in PDB entry 1JPA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 637first strand
Strand 2
A
642 648anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
704 708anti-parallel
Strand 5
A
693 697anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 714first strand
Strand 2
A
760 762anti-parallel
Strand 3
A
768 770anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 637first strand
Strand 2
B
642 648anti-parallel
Strand 3
B
656 662anti-parallel
Strand 4
B
704 708anti-parallel
Strand 5
B
693 697anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
760 762first strand
Strand 2
B
768 770anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il