Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPJ entry

There is 1 chain in PDB entry 1JPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
23 41Right-handed alpha
Helix 4
4
A
44 62Right-handed alpha
Helix 5
5
A
63 67Right-handed 310
Helix 6
6
A
69 87Right-handed alpha
Helix 7
7
A
110 124Right-handed alpha
Helix 8
8
A
138 153Right-handed alpha
Helix 9
9
A
164 180Right-handed alpha
Helix 10
10
A
195 210Right-handed alpha
Helix 11
11
A
221 223Right-handed 310
Helix 12
12
A
224 237Right-handed alpha
Helix 13
13
A
253 264Right-handed alpha
Helix 14
14
A
283 293Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JPJ.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
129 133parallel
Strand 3
A
183 187parallel
Strand 4
A
99 104parallel
Strand 5
A
213 219parallel
Strand 6
A
241 245parallel
Strand 7
A
267 271parallel
Strand 8
A
279 281anti-parallel
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