Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPM entry

There are 4 chains in PDB entry 1JPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 359
B
 MET 1LEU 359
C
 MET 1ALA 358
D
 MET 1ALA 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 1JPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 69Right-handed alpha
Helix 2
2
A
69 75Right-handed alpha
Helix 3
3
A
78 80Right-handed 310
Helix 4
4
A
81 92Right-handed alpha
Helix 5
5
A
96 115Right-handed alpha
Helix 6
6
A
118 123Right-handed alpha
Helix 7
7
A
140 154Right-handed alpha
Helix 8
8
A
167 183Right-handed alpha
Helix 9
10
A
197 211Right-handed alpha
Helix 10
11
A
226 237Right-handed alpha
Helix 11
12
A
249 259Right-handed alpha
Helix 12
13
A
268 273Right-handed alpha
Helix 13
14
A
274 288Right-handed alpha
Helix 14
15
A
300 314Right-handed alpha
Helix 15
16
A
323 328Right-handed 310
Helix 16
17
B
58 69Right-handed alpha
Helix 17
18
B
69 75Right-handed alpha
Helix 18
19
B
78 80Right-handed 310
Helix 19
20
B
81 92Right-handed alpha
Helix 20
21
B
96 116Right-handed alpha
Helix 21
22
B
118 123Right-handed alpha
Helix 22
23
B
140 154Right-handed alpha
Helix 23
24
B
167 183Right-handed alpha
Helix 24
26
B
197 211Right-handed alpha
Helix 25
27
B
226 237Right-handed alpha
Helix 26
28
B
249 260Right-handed alpha
Helix 27
29
B
268 273Right-handed alpha
Helix 28
30
B
274 288Right-handed alpha
Helix 29
31
B
300 314Right-handed alpha
Helix 30
32
B
323 328Right-handed 310
Helix 31
33
C
58 69Right-handed alpha
Helix 32
34
C
69 75Right-handed alpha
Helix 33
35
C
81 92Right-handed alpha
Helix 34
36
C
96 116Right-handed alpha
Helix 35
37
C
118 123Right-handed alpha
Helix 36
38
C
140 154Right-handed alpha
Helix 37
39
C
167 183Right-handed alpha
Helix 38
40
C
197 211Right-handed alpha
Helix 39
41
C
226 237Right-handed alpha
Helix 40
42
C
249 260Right-handed alpha
Helix 41
43
C
268 273Right-handed alpha
Helix 42
44
C
274 288Right-handed alpha
Helix 43
45
C
300 314Right-handed alpha
Helix 44
46
C
323 328Right-handed 310
Helix 45
47
D
58 69Right-handed alpha
Helix 46
48
D
69 75Right-handed alpha
Helix 47
49
D
78 80Right-handed 310
Helix 48
50
D
81 92Right-handed alpha
Helix 49
51
D
96 115Right-handed alpha
Helix 50
52
D
118 123Right-handed alpha
Helix 51
53
D
140 154Right-handed alpha
Helix 52
55
D
184 186Right-handed 310
Helix 53
56
D
197 211Right-handed alpha
Helix 54
57
D
226 237Right-handed alpha
Helix 55
58
D
249 260Right-handed alpha
Helix 56
59
D
268 273Right-handed alpha
Helix 57
60
D
274 288Right-handed alpha
Helix 58
61
D
300 314Right-handed alpha
Helix 59
62
D
323 328Right-handed 310
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There are 16 sheets in PDB entry 1JPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 20first strand
Strand 2
A
43 48anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
343 345anti-parallel
Strand 3
A
338 340anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
158 162parallel
Strand 3
A
187 191parallel
Strand 4
A
215 219parallel
Strand 5
A
241 243parallel
Strand 6
A
264 267parallel
Strand 7
A
292 294parallel
Strand 8
A
317 320parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
354 357anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 38first strand
Strand 2
B
43 48anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
343 345anti-parallel
Strand 3
B
338 340anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
158 162parallel
Strand 3
B
187 191parallel
Strand 4
B
215 219parallel
Strand 5
B
241 243parallel
Strand 6
B
264 267parallel
Strand 7
B
292 294parallel
Strand 8
B
317 320parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
354 357anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 38first strand
Strand 2
C
43 48anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
343 345anti-parallel
Strand 3
C
338 340anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
158 162parallel
Strand 3
C
187 191parallel
Strand 4
C
215 219parallel
Strand 5
C
241 243parallel
Strand 6
C
264 267parallel
Strand 7
C
292 294parallel
Strand 8
C
317 320parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 335first strand
Strand 2
C
354 357anti-parallel
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There are 1 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 48first strand
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 131first strand
Strand 2
D
343 345anti-parallel
Strand 3
D
338 340anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 135first strand
Strand 2
D
158 162parallel
Strand 3
D
187 191parallel
Strand 4
D
215 219parallel
Strand 5
D
241 243parallel
Strand 6
D
264 267parallel
Strand 7
D
292 294parallel
Strand 8
D
317 320parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 335first strand
Strand 2
D
354 357anti-parallel
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