Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPR entry

There are 2 chains in PDB entry 1JPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 340
B
 ALA 1SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1JPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
33 46Right-handed alpha
Helix 3
3
A
49 53Right-handed 310
Helix 4
4
A
55 65Right-handed alpha
Helix 5
5
A
66 95Right-handed alpha
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
101 130Right-handed alpha
Helix 8
8
A
132 143Right-handed alpha
Helix 9
9
A
143 151Right-handed alpha
Helix 10
10
A
152 171Right-handed alpha
Helix 11
11
A
185 206Right-handed alpha
Helix 12
12
A
206 220Right-handed alpha
Helix 13
13
A
224 254Right-handed alpha
Helix 14
14
A
258 268Right-handed alpha
Helix 15
15
A
268 291Right-handed alpha
Helix 16
16
A
300 319Right-handed alpha
Helix 17
17
A
334 340Right-handed alpha
Helix 18
18
B
33 46Right-handed alpha
Helix 19
19
B
49 53Right-handed 310
Helix 20
20
B
57 65Right-handed alpha
Helix 21
21
B
66 96Right-handed alpha
Helix 22
22
B
101 130Right-handed alpha
Helix 23
23
B
132 143Right-handed alpha
Helix 24
24
B
143 150Right-handed alpha
Helix 25
25
B
152 171Right-handed alpha
Helix 26
26
B
185 206Right-handed alpha
Helix 27
27
B
206 221Right-handed alpha
Helix 28
28
B
224 255Right-handed alpha
Helix 29
29
B
258 268Right-handed alpha
Helix 30
30
B
268 291Right-handed alpha
Helix 31
31
B
300 319Right-handed alpha
Helix 32
32
B
332 338Right-handed 310
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There are 2 sheets in PDB entry 1JPR. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
180 184anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
180 184anti-parallel
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