Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQ6 entry

There are 4 chains in PDB entry 1JQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11GLY 86
A
 VAL 88LEU 160
A
 SER 162ARG 201
A
 GLY 203TYR 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1JQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 40Right-handed alpha
Helix 2
2
A
90 102Right-handed alpha
Helix 3
3
A
118 128Right-handed alpha
Helix 4
4
A
176 182Right-handed alpha
Helix 5
5
A
188 200Right-handed alpha
Helix 6
6
A
201 205Right-handed 310
Helix 7
7
A
217 230Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JQ6.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
158 161anti-parallel
Strand 3
A
58 61parallel
Strand 4
A
64 77anti-parallel
Strand 5
A
81 88anti-parallel
Strand 6
A
14 22anti-parallel
Strand 7
A
172 174anti-parallel
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