Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQ7 entry

There are 2 chains in PDB entry 1JQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1007ALA 1256
B
 GLN 1307ALA 1556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1JQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1035 1043Right-handed alpha
Helix 2
2
A
1092 1102Right-handed alpha
Helix 3
3
A
1118 1128Right-handed alpha
Helix 4
4
A
1176 1182Right-handed alpha
Helix 5
5
A
1189 1196Right-handed alpha
Helix 6
6
A
1217 1229Right-handed alpha
Helix 7
7
A
1233 1245Right-handed alpha
Helix 8
8
A
1248 1252Right-handed 310
Helix 9
9
B
1329 1333Right-handed 310
Helix 10
10
B
1335 1343Right-handed alpha
Helix 11
11
B
1392 1403Right-handed alpha
Helix 12
12
B
1405 1410Right-handed alpha
Helix 13
13
B
1418 1428Right-handed alpha
Helix 14
14
B
1476 1482Right-handed alpha
Helix 15
15
B
1488 1500Right-handed alpha
Helix 16
16
B
1517 1530Right-handed alpha
Helix 17
17
B
1533 1546Right-handed alpha
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There are 3 sheets in PDB entry 1JQ7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1074 1075first strand
Strand 2
A
1083 1088anti-parallel
Strand 3
A
1014 1019anti-parallel
Strand 4
A
1172 1174anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1068 1071first strand
Strand 2
A
1058 1061anti-parallel
Strand 3
A
1130 1134first strand
Strand 4
A
1157 1161anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1430 1434first strand
Strand 2
B
1457 1461anti-parallel
Strand 3
B
1358 1361parallel
Strand 4
B
1368 1377anti-parallel
Strand 5
B
1381 1388anti-parallel
Strand 6
B
1314 1322anti-parallel
Strand 7
B
1472 1474anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il