Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQB entry

There are 4 chains in PDB entry 1JQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1001LEU 1351
B
MET 2001LEU 2351
C
MET 3001LEU 3351
D
MET 4001LEU 4351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1JQB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1037 1047Right-handed alpha
Helix 2
2
A
1092 1097Right-handed alpha
Helix 3
3
A
1099 1103Right-handed 310
Helix 4
4
A
1128 1133Right-handed alpha
Helix 5
5
A
1141 1147Right-handed alpha
Helix 6
6
A
1150 1162Right-handed alpha
Helix 7
7
A
1176 1188Right-handed alpha
Helix 8
8
A
1200 1211Right-handed alpha
Helix 9
9
A
1217 1221Right-handed 310
Helix 10
10
A
1222 1231Right-handed alpha
Helix 11
11
A
1247 1255Right-handed alpha
Helix 12
12
A
1281 1285Right-handed 310
Helix 13
13
A
1297 1311Right-handed alpha
Helix 14
14
A
1315 1318Right-handed 310
Helix 15
15
A
1329 1340Right-handed alpha
Helix 16
16
B
2037 2046Right-handed alpha
Helix 17
17
B
2092 2097Right-handed alpha
Helix 18
18
B
2099 2103Right-handed 310
Helix 19
19
B
2128 2133Right-handed alpha
Helix 20
20
B
2141 2147Right-handed alpha
Helix 21
21
B
2150 2162Right-handed alpha
Helix 22
22
B
2176 2188Right-handed alpha
Helix 23
23
B
2200 2211Right-handed alpha
Helix 24
24
B
2217 2221Right-handed 310
Helix 25
25
B
2222 2231Right-handed alpha
Helix 26
26
B
2246 2255Right-handed alpha
Helix 27
27
B
2281 2285Right-handed 310
Helix 28
28
B
2297 2311Right-handed alpha
Helix 29
29
B
2315 2318Right-handed 310
Helix 30
30
B
2326 2328Right-handed 310
Helix 31
31
B
2329 2337Right-handed alpha
Helix 32
32
C
3037 3046Right-handed alpha
Helix 33
33
C
3092 3097Right-handed alpha
Helix 34
34
C
3099 3103Right-handed 310
Helix 35
35
C
3128 3133Right-handed alpha
Helix 36
36
C
3141 3150Right-handed alpha
Helix 37
37
C
3150 3162Right-handed alpha
Helix 38
38
C
3176 3188Right-handed alpha
Helix 39
39
C
3200 3210Right-handed alpha
Helix 40
40
C
3217 3221Right-handed 310
Helix 41
41
C
3222 3231Right-handed alpha
Helix 42
42
C
3247 3255Right-handed alpha
Helix 43
43
C
3281 3285Right-handed 310
Helix 44
44
C
3298 3311Right-handed alpha
Helix 45
45
C
3315 3318Right-handed 310
Helix 46
46
C
3329 3340Right-handed alpha
Helix 47
47
D
4038 4046Right-handed alpha
Helix 48
48
D
4092 4097Right-handed alpha
Helix 49
49
D
4099 4103Right-handed 310
Helix 50
50
D
4128 4133Right-handed alpha
Helix 51
51
D
4141 4147Right-handed alpha
Helix 52
52
D
4150 4162Right-handed alpha
Helix 53
53
D
4176 4188Right-handed alpha
Helix 54
54
D
4200 4211Right-handed alpha
Helix 55
55
D
4222 4231Right-handed alpha
Helix 56
56
D
4247 4255Right-handed alpha
Helix 57
57
D
4279 4285Right-handed 310
Helix 58
58
D
4298 4311Right-handed alpha
Helix 59
59
D
4315 4318Right-handed 310
Helix 60
60
D
4329 4340Right-handed alpha
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There are 18 sheets in PDB entry 1JQB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1011 1016first strand
Strand 2
A
1002 1008anti-parallel
Strand 3
A
1055 1056anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1134 1135first strand
Strand 2
A
1080 1083anti-parallel
Strand 3
A
1061 1068anti-parallel
Strand 4
A
1027 1034anti-parallel
Strand 5
A
1124 1126anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1134 1135first strand
Strand 2
A
1080 1083anti-parallel
Strand 3
A
1061 1068anti-parallel
Strand 4
A
1027 1034anti-parallel
Strand 5
A
1346 1350anti-parallel
Strand 6
A
1320 1325parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1214 1216first strand
Strand 2
A
1194 1197parallel
Strand 3
A
1170 1173parallel
Strand 4
A
1236 1241parallel
Strand 5
A
1256 1264parallel
Strand 6
A
1289 1292parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1273 1277first strand
Strand 2
B
2273 2277anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2011 2016first strand
Strand 2
B
2002 2008anti-parallel
Strand 3
B
2055 2056anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2124 2126first strand
Strand 2
B
2027 2034anti-parallel
Strand 3
B
2061 2068anti-parallel
Strand 4
B
2080 2083anti-parallel
Strand 5
B
2134 2135anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2214 2216first strand
Strand 2
B
2194 2197parallel
Strand 3
B
2170 2173parallel
Strand 4
B
2236 2241parallel
Strand 5
B
2256 2264parallel
Strand 6
B
2289 2292parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2320 2324first strand
Strand 2
B
2346 2349parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3012 3014first strand
Strand 2
C
3004 3006anti-parallel
Strand 3
C
3055 3056anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3134 3135first strand
Strand 2
C
3080 3083anti-parallel
Strand 3
C
3061 3068anti-parallel
Strand 4
C
3027 3034anti-parallel
Strand 5
C
3124 3126anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3134 3135first strand
Strand 2
C
3080 3083anti-parallel
Strand 3
C
3061 3068anti-parallel
Strand 4
C
3027 3034anti-parallel
Strand 5
C
3346 3350anti-parallel
Strand 6
C
3320 3325parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3214 3216first strand
Strand 2
C
3194 3197parallel
Strand 3
C
3170 3173parallel
Strand 4
C
3236 3241parallel
Strand 5
C
3256 3264parallel
Strand 6
C
3289 3292parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3273 3277first strand
Strand 2
D
4273 4277anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4012 4016first strand
Strand 2
D
4002 4006anti-parallel
Strand 3
D
4055 4056anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4134 4135first strand
Strand 2
D
4080 4083anti-parallel
Strand 3
D
4061 4068anti-parallel
Strand 4
D
4027 4034anti-parallel
Strand 5
D
4124 4126anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4134 4135first strand
Strand 2
D
4080 4083anti-parallel
Strand 3
D
4061 4068anti-parallel
Strand 4
D
4027 4034anti-parallel
Strand 5
D
4346 4350anti-parallel
Strand 6
D
4320 4325parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4214 4216first strand
Strand 2
D
4194 4197parallel
Strand 3
D
4170 4173parallel
Strand 4
D
4236 4241parallel
Strand 5
D
4256 4264parallel
Strand 6
D
4289 4292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il