Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQC entry

There are 2 chains in PDB entry 1JQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1VAL 340
B
ALA 1SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1JQC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
33 46Right-handed alpha
Helix 3
3
A
49 53Right-handed 310
Helix 4
4
A
55 65Right-handed alpha
Helix 5
5
A
66 95Right-handed alpha
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
101 128Right-handed alpha
Helix 8
8
A
132 143Right-handed alpha
Helix 9
9
A
143 151Right-handed alpha
Helix 10
10
A
152 171Right-handed alpha
Helix 11
11
A
185 206Right-handed alpha
Helix 12
12
A
206 221Right-handed alpha
Helix 13
13
A
224 254Right-handed alpha
Helix 14
14
A
258 268Right-handed alpha
Helix 15
15
A
268 291Right-handed alpha
Helix 16
16
A
300 319Right-handed alpha
Helix 17
17
A
332 334Right-handed 310
Helix 18
18
A
335 340Right-handed alpha
Helix 19
19
B
33 46Right-handed alpha
Helix 20
20
B
49 53Right-handed 310
Helix 21
21
B
57 65Right-handed alpha
Helix 22
22
B
66 96Right-handed alpha
Helix 23
23
B
101 130Right-handed alpha
Helix 24
24
B
132 138Right-handed alpha
Helix 25
25
B
143 151Right-handed alpha
Helix 26
26
B
152 171Right-handed alpha
Helix 27
27
B
185 206Right-handed alpha
Helix 28
28
B
206 221Right-handed alpha
Helix 29
29
B
224 255Right-handed alpha
Helix 30
30
B
258 268Right-handed alpha
Helix 31
31
B
268 291Right-handed alpha
Helix 32
32
B
300 319Right-handed alpha
Helix 33
33
B
332 338Right-handed 310
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There are 2 sheets in PDB entry 1JQC. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 177first strand
Strand 2
A
180 184anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
173 177first strand
Strand 2
B
180 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il