Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQH entry

There are 3 chains in PDB entry 1JQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 984LYS 1286
B
 ALA 984LYS 1286
C
 ALA 984LYS 1286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 1JQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1040 1052Right-handed alpha
Helix 2
2
A
1053 1057Right-handed 310
Helix 3
3
A
1086 1095Right-handed alpha
Helix 4
4
A
1108 1129Right-handed alpha
Helix 5
5
A
1137 1139Right-handed 310
Helix 6
6
A
1175 1179Right-handed 310
Helix 7
7
A
1180 1187Right-handed alpha
Helix 8
8
A
1190 1207Right-handed alpha
Helix 9
9
A
1217 1227Right-handed alpha
Helix 10
10
A
1238 1249Right-handed alpha
Helix 11
11
A
1252 1256Right-handed 310
Helix 12
12
A
1258 1265Right-handed alpha
Helix 13
13
A
1266 1270Right-handed 310
Helix 14
14
A
1271 1272Right-handed 310
Helix 15
15
A
1273 1278Right-handed alpha
Helix 16
16
B
1040 1052Right-handed alpha
Helix 17
17
B
1053 1057Right-handed 310
Helix 18
18
B
1086 1093Right-handed alpha
Helix 19
19
B
1108 1129Right-handed alpha
Helix 20
20
B
1137 1139Right-handed 310
Helix 21
21
B
1175 1179Right-handed 310
Helix 22
22
B
1180 1187Right-handed alpha
Helix 23
23
B
1190 1207Right-handed alpha
Helix 24
24
B
1217 1227Right-handed alpha
Helix 25
25
B
1238 1249Right-handed alpha
Helix 26
26
B
1252 1256Right-handed 310
Helix 27
27
B
1258 1265Right-handed alpha
Helix 28
28
B
1266 1270Right-handed 310
Helix 29
29
B
1271 1272Right-handed 310
Helix 30
30
B
1273 1278Right-handed alpha
Helix 31
31
C
1040 1052Right-handed alpha
Helix 32
32
C
1053 1057Right-handed 310
Helix 33
33
C
1086 1093Right-handed alpha
Helix 34
34
C
1108 1129Right-handed alpha
Helix 35
35
C
1137 1139Right-handed 310
Helix 36
36
C
1175 1179Right-handed 310
Helix 37
37
C
1180 1187Right-handed alpha
Helix 38
38
C
1190 1207Right-handed alpha
Helix 39
39
C
1217 1227Right-handed alpha
Helix 40
40
C
1238 1249Right-handed alpha
Helix 41
41
C
1252 1256Right-handed 310
Helix 42
42
C
1258 1265Right-handed alpha
Helix 43
43
C
1266 1270Right-handed 310
Helix 44
44
C
1271 1272Right-handed 310
Helix 45
45
C
1273 1278Right-handed alpha
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There are 12 sheets in PDB entry 1JQH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
986 987first strand
Strand 2
B
1172 1173parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1007first strand
Strand 2
A
1012 1022anti-parallel
Strand 3
A
1025 1034anti-parallel
Strand 4
A
1076 1080anti-parallel
Strand 5
A
1065 1069anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1132first strand
Strand 2
A
1167 1168parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1141 1143first strand
Strand 2
A
1149 1151anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1172 1173first strand
Strand 2
C
986 987parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
986 987first strand
Strand 2
C
1172 1173parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
999 1007first strand
Strand 2
B
1012 1022anti-parallel
Strand 3
B
1025 1034anti-parallel
Strand 4
B
1076 1080anti-parallel
Strand 5
B
1065 1069anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1131 1132first strand
Strand 2
B
1167 1168parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1141 1143first strand
Strand 2
B
1149 1151anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
999 1007first strand
Strand 2
C
1012 1022anti-parallel
Strand 3
C
1025 1034anti-parallel
Strand 4
C
1076 1080anti-parallel
Strand 5
C
1065 1069anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1131 1132first strand
Strand 2
C
1167 1168parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1141 1143first strand
Strand 2
C
1149 1151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il