Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQJ entry

There are 4 chains in PDB entry 1JQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 366
B
 MET 1LEU 366
C
 MET 1HIS 333
D
 MET 1HIS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1JQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 17Right-handed alpha
Helix 2
2
A
72 81Right-handed alpha
Helix 3
3
A
131 141Right-handed alpha
Helix 4
4
A
142 146Right-handed 310
Helix 5
5
A
152 155Right-handed 310
Helix 6
6
A
197 207Right-handed alpha
Helix 7
7
A
243 247Right-handed 310
Helix 8
8
A
260 274Right-handed alpha
Helix 9
9
A
276 279Right-handed 310
Helix 10
10
A
320 331Right-handed alpha
Helix 11
11
B
7 17Right-handed alpha
Helix 12
12
B
72 81Right-handed alpha
Helix 13
13
B
131 141Right-handed alpha
Helix 14
14
B
197 207Right-handed alpha
Helix 15
15
B
243 247Right-handed 310
Helix 16
16
B
260 274Right-handed alpha
Helix 17
17
B
276 279Right-handed 310
Helix 18
18
B
320 331Right-handed alpha
Helix 19
19
C
5 10Right-handed alpha
Helix 20
20
C
11 14Right-handed 310
Helix 21
21
C
27 44Right-handed alpha
Helix 22
22
C
60 69Right-handed alpha
Helix 23
23
C
92 101Right-handed alpha
Helix 24
24
C
120 123Right-handed 310
Helix 25
25
C
124 131Right-handed alpha
Helix 26
26
C
146 157Right-handed alpha
Helix 27
27
C
163 175Right-handed alpha
Helix 28
28
C
177 192Right-handed alpha
Helix 29
29
C
198 207Right-handed alpha
Helix 30
30
C
213 223Right-handed alpha
Helix 31
31
C
225 236Right-handed alpha
Helix 32
32
C
245 262Right-handed alpha
Helix 33
33
C
285 293Right-handed alpha
Helix 34
34
C
294 315Right-handed alpha
Helix 35
35
C
324 332Right-handed alpha
Helix 36
36
D
5 10Right-handed alpha
Helix 37
37
D
27 44Right-handed alpha
Helix 38
38
D
60 69Right-handed alpha
Helix 39
39
D
92 101Right-handed alpha
Helix 40
40
D
120 123Right-handed 310
Helix 41
41
D
124 131Right-handed alpha
Helix 42
42
D
146 157Right-handed alpha
Helix 43
43
D
163 175Right-handed alpha
Helix 44
44
D
177 192Right-handed alpha
Helix 45
45
D
198 204Right-handed alpha
Helix 46
46
D
213 222Right-handed alpha
Helix 47
47
D
225 240Right-handed alpha
Helix 48
48
D
242 263Right-handed alpha
Helix 49
49
D
271 275Right-handed 310
Helix 50
50
D
288 293Right-handed alpha
Helix 51
51
D
294 315Right-handed alpha
Helix 52
52
D
322 331Right-handed alpha
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There are 12 sheets in PDB entry 1JQJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
96 98anti-parallel
Strand 5
A
107 109anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
34 38anti-parallel
Strand 4
A
41 47anti-parallel
Strand 5
A
51 58anti-parallel
Strand 6
A
230 235anti-parallel
Strand 7
A
222 227anti-parallel
Strand 8
A
215 219anti-parallel
Strand 9
A
128 129anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 172first strand
Strand 2
A
176 196anti-parallel
Strand 3
A
357 361anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
350 351anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
289 294anti-parallel
Strand 3
A
281 286anti-parallel
Strand 4
A
315 319anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
2 5anti-parallel
Strand 3
B
88 93anti-parallel
Strand 4
B
96 98anti-parallel
Strand 5
B
107 109anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
66 69anti-parallel
Strand 3
B
34 38anti-parallel
Strand 4
B
41 47anti-parallel
Strand 5
B
51 58anti-parallel
Strand 6
B
230 235anti-parallel
Strand 7
B
222 227anti-parallel
Strand 8
B
215 219anti-parallel
Strand 9
B
124 129anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 172first strand
Strand 2
B
176 196anti-parallel
Strand 3
B
357 361anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
255 259anti-parallel
Strand 3
B
335 339anti-parallel
Strand 4
B
348 351anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
289 294anti-parallel
Strand 3
B
281 286anti-parallel
Strand 4
B
315 319anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
135 138parallel
Strand 3
C
20 24parallel
Strand 4
C
108 114parallel
Strand 5
C
77 83parallel
Strand 6
C
47 54parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
135 138parallel
Strand 3
D
20 24parallel
Strand 4
D
108 114parallel
Strand 5
D
77 83parallel
Strand 6
D
47 54parallel
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