Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQK entry

There are 6 chains in PDB entry 1JQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28LEU 637
B
 GLU 28LEU 637
C
 GLU 28LEU 637
D
 GLU 28LEU 637
E
 GLU 28LEU 637
F
 GLU 28LEU 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are170 helices in PDB entry 1JQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 38Right-handed alpha
Helix 2
2
A
41 47Right-handed alpha
Helix 3
3
A
75 110Right-handed alpha
Helix 4
4
A
121 132Right-handed alpha
Helix 5
5
A
140 155Right-handed alpha
Helix 6
6
A
165 172Right-handed alpha
Helix 7
7
A
173 184Right-handed alpha
Helix 8
8
A
189 201Right-handed alpha
Helix 9
9
A
208 239Right-handed alpha
Helix 10
10
A
266 280Right-handed alpha
Helix 11
11
A
282 287Right-handed alpha
Helix 12
12
A
299 309Right-handed alpha
Helix 13
13
A
321 326Right-handed alpha
Helix 14
14
A
342 349Right-handed alpha
Helix 15
15
A
372 374Right-handed 310
Helix 16
16
A
375 392Right-handed alpha
Helix 17
17
A
413 423Right-handed alpha
Helix 18
18
A
429 440Right-handed alpha
Helix 19
19
A
459 472Right-handed alpha
Helix 20
20
A
480 490Right-handed alpha
Helix 21
21
A
493 501Right-handed alpha
Helix 22
22
A
502 516Right-handed alpha
Helix 23
23
A
533 548Right-handed alpha
Helix 24
24
A
566 580Right-handed alpha
Helix 25
25
A
594 603Right-handed alpha
Helix 26
26
A
603 609Right-handed alpha
Helix 27
27
A
618 636Right-handed alpha
Helix 28
28
B
29 38Right-handed alpha
Helix 29
29
B
41 47Right-handed alpha
Helix 30
30
B
75 110Right-handed alpha
Helix 31
31
B
121 126Right-handed alpha
Helix 32
32
B
140 145Right-handed alpha
Helix 33
33
B
146 155Right-handed alpha
Helix 34
34
B
165 172Right-handed alpha
Helix 35
35
B
173 184Right-handed alpha
Helix 36
36
B
189 201Right-handed alpha
Helix 37
37
B
208 239Right-handed alpha
Helix 38
38
B
249 253Right-handed 310
Helix 39
39
B
266 280Right-handed alpha
Helix 40
40
B
299 309Right-handed alpha
Helix 41
41
B
321 326Right-handed alpha
Helix 42
42
B
342 349Right-handed alpha
Helix 43
43
B
372 374Right-handed 310
Helix 44
44
B
375 392Right-handed alpha
Helix 45
45
B
413 423Right-handed alpha
Helix 46
46
B
429 440Right-handed alpha
Helix 47
47
B
459 472Right-handed alpha
Helix 48
48
B
479 490Right-handed alpha
Helix 49
49
B
493 501Right-handed alpha
Helix 50
50
B
502 516Right-handed alpha
Helix 51
51
B
533 548Right-handed alpha
Helix 52
52
B
551 555Right-handed 310
Helix 53
53
B
566 580Right-handed alpha
Helix 54
54
B
594 603Right-handed alpha
Helix 55
55
B
603 609Right-handed alpha
Helix 56
56
B
618 636Right-handed alpha
Helix 57
57
C
29 38Right-handed alpha
Helix 58
58
C
41 47Right-handed alpha
Helix 59
59
C
75 110Right-handed alpha
Helix 60
60
C
121 133Right-handed alpha
Helix 61
61
C
140 155Right-handed alpha
Helix 62
62
C
165 172Right-handed alpha
Helix 63
63
C
173 184Right-handed alpha
Helix 64
64
C
189 201Right-handed alpha
Helix 65
65
C
208 239Right-handed alpha
Helix 66
66
C
249 253Right-handed 310
Helix 67
67
C
266 280Right-handed alpha
Helix 68
68
C
280 287Right-handed alpha
Helix 69
69
C
299 309Right-handed alpha
Helix 70
70
C
321 326Right-handed alpha
Helix 71
71
C
342 349Right-handed alpha
Helix 72
72
C
372 374Right-handed 310
Helix 73
73
C
375 392Right-handed alpha
Helix 74
74
C
413 423Right-handed alpha
Helix 75
75
C
429 440Right-handed alpha
Helix 76
76
C
459 472Right-handed alpha
Helix 77
77
C
479 490Right-handed alpha
Helix 78
78
C
493 501Right-handed alpha
Helix 79
79
C
502 516Right-handed alpha
Helix 80
80
C
533 548Right-handed alpha
Helix 81
81
C
551 555Right-handed 310
Helix 82
82
C
566 580Right-handed alpha
Helix 83
83
C
594 603Right-handed alpha
Helix 84
84
C
603 609Right-handed alpha
Helix 85
85
C
618 636Right-handed alpha
Helix 86
86
D
29 38Right-handed alpha
Helix 87
87
D
41 47Right-handed alpha
Helix 88
88
D
75 110Right-handed alpha
Helix 89
89
D
121 132Right-handed alpha
Helix 90
90
D
141 155Right-handed alpha
Helix 91
91
D
165 172Right-handed alpha
Helix 92
92
D
173 184Right-handed alpha
Helix 93
93
D
189 201Right-handed alpha
Helix 94
94
D
208 239Right-handed alpha
Helix 95
95
D
266 280Right-handed alpha
Helix 96
96
D
280 287Right-handed alpha
Helix 97
97
D
299 309Right-handed alpha
Helix 98
98
D
321 326Right-handed alpha
Helix 99
99
D
342 349Right-handed alpha
Helix 100
100
D
372 374Right-handed 310
Helix 101
101
D
375 392Right-handed alpha
Helix 102
102
D
413 423Right-handed alpha
Helix 103
103
D
429 440Right-handed alpha
Helix 104
104
D
459 472Right-handed alpha
Helix 105
105
D
479 490Right-handed alpha
Helix 106
106
D
493 501Right-handed alpha
Helix 107
107
D
502 516Right-handed alpha
Helix 108
108
D
533 548Right-handed alpha
Helix 109
109
D
551 555Right-handed 310
Helix 110
110
D
566 580Right-handed alpha
Helix 111
111
D
594 603Right-handed alpha
Helix 112
112
D
603 609Right-handed alpha
Helix 113
113
D
618 636Right-handed alpha
Helix 114
114
E
29 38Right-handed alpha
Helix 115
115
E
41 47Right-handed alpha
Helix 116
116
E
75 110Right-handed alpha
Helix 117
117
E
121 133Right-handed alpha
Helix 118
118
E
141 155Right-handed alpha
Helix 119
119
E
165 172Right-handed alpha
Helix 120
120
E
173 183Right-handed alpha
Helix 121
121
E
189 201Right-handed alpha
Helix 122
122
E
208 239Right-handed alpha
Helix 123
123
E
249 253Right-handed 310
Helix 124
124
E
266 280Right-handed alpha
Helix 125
125
E
280 287Right-handed alpha
Helix 126
126
E
299 309Right-handed alpha
Helix 127
127
E
321 326Right-handed alpha
Helix 128
128
E
342 349Right-handed alpha
Helix 129
129
E
372 374Right-handed 310
Helix 130
130
E
375 392Right-handed alpha
Helix 131
131
E
413 423Right-handed alpha
Helix 132
132
E
429 440Right-handed alpha
Helix 133
133
E
459 472Right-handed alpha
Helix 134
134
E
479 490Right-handed alpha
Helix 135
135
E
493 501Right-handed alpha
Helix 136
136
E
502 516Right-handed alpha
Helix 137
137
E
533 548Right-handed alpha
Helix 138
138
E
551 555Right-handed 310
Helix 139
139
E
566 580Right-handed alpha
Helix 140
140
E
594 603Right-handed alpha
Helix 141
141
E
603 609Right-handed alpha
Helix 142
142
E
618 636Right-handed alpha
Helix 143
143
F
29 38Right-handed alpha
Helix 144
144
F
41 47Right-handed alpha
Helix 145
145
F
75 110Right-handed alpha
Helix 146
146
F
121 133Right-handed alpha
Helix 147
147
F
140 155Right-handed alpha
Helix 148
148
F
165 172Right-handed alpha
Helix 149
149
F
173 183Right-handed alpha
Helix 150
150
F
189 201Right-handed alpha
Helix 151
151
F
208 239Right-handed alpha
Helix 152
152
F
249 253Right-handed 310
Helix 153
153
F
266 279Right-handed alpha
Helix 154
154
F
280 287Right-handed alpha
Helix 155
155
F
299 309Right-handed alpha
Helix 156
156
F
321 326Right-handed alpha
Helix 157
157
F
342 349Right-handed alpha
Helix 158
158
F
372 374Right-handed 310
Helix 159
159
F
375 392Right-handed alpha
Helix 160
160
F
413 423Right-handed alpha
Helix 161
161
F
429 440Right-handed alpha
Helix 162
162
F
459 472Right-handed alpha
Helix 163
163
F
480 490Right-handed alpha
Helix 164
164
F
493 501Right-handed alpha
Helix 165
165
F
502 516Right-handed alpha
Helix 166
166
F
533 548Right-handed alpha
Helix 167
167
F
566 580Right-handed alpha
Helix 168
168
F
594 603Right-handed alpha
Helix 169
169
F
603 609Right-handed alpha
Helix 170
170
F
618 636Right-handed alpha
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There are 24 sheets in PDB entry 1JQK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
58 59anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 248first strand
Strand 2
A
406 410anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
292 298parallel
Strand 3
A
257 263parallel
Strand 4
A
331 334parallel
Strand 5
A
353 356parallel
Strand 6
A
367 368parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 529first strand
Strand 2
A
474 479parallel
Strand 3
A
444 448parallel
Strand 4
A
557 561parallel
Strand 5
A
582 585parallel
Strand 6
A
612 615parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
58 59anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 248first strand
Strand 2
B
406 410anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
292 298parallel
Strand 3
B
257 263parallel
Strand 4
B
331 334parallel
Strand 5
B
353 356parallel
Strand 6
B
367 368parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 527first strand
Strand 2
B
474 478parallel
Strand 3
B
444 448parallel
Strand 4
B
557 561parallel
Strand 5
B
582 585parallel
Strand 6
B
612 615parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
58 59anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 248first strand
Strand 2
C
406 410anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 315first strand
Strand 2
C
292 298parallel
Strand 3
C
257 263parallel
Strand 4
C
331 334parallel
Strand 5
C
353 356parallel
Strand 6
C
367 368parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
525 527first strand
Strand 2
C
474 478parallel
Strand 3
C
444 448parallel
Strand 4
C
557 561parallel
Strand 5
C
582 585parallel
Strand 6
C
612 615parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 50first strand
Strand 2
D
58 59anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 248first strand
Strand 2
D
406 410anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
313 315first strand
Strand 2
D
292 298parallel
Strand 3
D
257 263parallel
Strand 4
D
331 334parallel
Strand 5
D
353 356parallel
Strand 6
D
367 368parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
525 527first strand
Strand 2
D
474 478parallel
Strand 3
D
444 448parallel
Strand 4
D
557 561parallel
Strand 5
D
582 585parallel
Strand 6
D
612 615parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 50first strand
Strand 2
E
58 59anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
244 248first strand
Strand 2
E
406 410anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 315first strand
Strand 2
E
292 298parallel
Strand 3
E
257 263parallel
Strand 4
E
331 334parallel
Strand 5
E
353 356parallel
Strand 6
E
367 368parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
525 527first strand
Strand 2
E
474 478parallel
Strand 3
E
444 448parallel
Strand 4
E
557 561parallel
Strand 5
E
582 585parallel
Strand 6
E
612 615parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
49 50first strand
Strand 2
F
58 59anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
244 248first strand
Strand 2
F
406 410anti-parallel
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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
313 315first strand
Strand 2
F
292 298parallel
Strand 3
F
257 263parallel
Strand 4
F
331 334parallel
Strand 5
F
353 356parallel
Strand 6
F
367 368parallel
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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
525 529first strand
Strand 2
F
474 479parallel
Strand 3
F
444 448parallel
Strand 4
F
557 561parallel
Strand 5
F
582 585parallel
Strand 6
F
612 615parallel
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