Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQL entry

There are 2 chains in PDB entry 1JQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 366
B
MET 1GLN 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1JQL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
72 82Right-handed alpha
Helix 4
4
A
112 116Right-handed 310
Helix 5
5
A
132 141Right-handed alpha
Helix 6
6
A
142 146Right-handed 310
Helix 7
7
A
152 155Right-handed 310
Helix 8
8
A
197 206Right-handed alpha
Helix 9
9
A
243 247Right-handed 310
Helix 10
10
A
260 274Right-handed alpha
Helix 11
11
A
320 331Right-handed alpha
Helix 12
12
B
5 7Right-handed 310
Helix 13
13
B
8 16Right-handed alpha
Helix 14
14
B
27 45Right-handed alpha
Helix 15
15
B
60 70Right-handed alpha
Helix 16
16
B
92 104Right-handed alpha
Helix 17
17
B
120 123Right-handed 310
Helix 18
18
B
124 131Right-handed alpha
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There are 5 sheets in PDB entry 1JQL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 6first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
104 109anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 71first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
230 235anti-parallel
Strand 6
A
222 227anti-parallel
Strand 7
A
213 218anti-parallel
Strand 8
A
126 131anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 259first strand
Strand 2
A
335 340anti-parallel
Strand 3
A
347 351anti-parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
176 196anti-parallel
Strand 6
A
157 172anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
304 307first strand
Strand 2
A
289 294anti-parallel
Strand 3
A
281 286anti-parallel
Strand 4
A
315 319anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 3first strand
Strand 2
B
135 138parallel
Strand 3
B
20 24parallel
Strand 4
B
110 113parallel
Strand 5
B
78 83parallel
Strand 6
B
49 51parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il