Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQN entry

There is 1 chain in PDB entry 1JQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLY 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1JQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 27Right-handed alpha
Helix 2
2
A
29 47Right-handed alpha
Helix 3
3
A
49 62Right-handed alpha
Helix 4
4
A
64 92Right-handed alpha
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
118 128Right-handed alpha
Helix 7
7
A
147 162Right-handed alpha
Helix 8
8
A
167 188Right-handed alpha
Helix 9
9
A
197 232Right-handed alpha
Helix 10
10
A
260 290Right-handed alpha
Helix 11
11
A
296 304Right-handed alpha
Helix 12
12
A
310 335Right-handed alpha
Helix 13
13
A
348 366Right-handed alpha
Helix 14
14
A
368 373Right-handed alpha
Helix 15
15
A
374 386Right-handed alpha
Helix 16
16
A
399 413Right-handed alpha
Helix 17
17
A
417 421Right-handed 310
Helix 18
18
A
422 436Right-handed alpha
Helix 19
19
A
448 464Right-handed alpha
Helix 20
20
A
479 492Right-handed alpha
Helix 21
21
A
507 531Right-handed alpha
Helix 22
22
A
540 572Right-handed alpha
Helix 23
23
A
583 587Right-handed 310
Helix 24
24
A
588 598Right-handed alpha
Helix 25
25
A
613 615Right-handed 310
Helix 26
26
A
616 622Right-handed alpha
Helix 27
27
A
623 644Right-handed alpha
Helix 28
28
A
650 673Right-handed alpha
Helix 29
29
A
677 686Right-handed alpha
Helix 30
30
A
687 694Right-handed alpha
Helix 31
31
A
708 712Right-handed 310
Helix 32
32
A
713 724Right-handed alpha
Helix 33
33
A
727 731Right-handed 310
Helix 34
34
A
733 743Right-handed alpha
Helix 35
35
A
746 774Right-handed alpha
Helix 36
36
A
775 787Right-handed alpha
Helix 37
37
A
791 813Right-handed alpha
Helix 38
38
A
822 857Right-handed alpha
Helix 39
39
A
861 880Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JQN.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
243 247parallel
Strand 3
A
392 398parallel
Strand 4
A
469 475parallel
Strand 5
A
501 505parallel
Strand 6
A
534 539parallel
Strand 7
A
574 579parallel
Strand 8
A
608 612parallel
Strand 9
A
131 135parallel
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