Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQO entry

There are 2 chains in PDB entry 1JQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 35GLY 970
B
 ILE 35GLY 970
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 83 helices in PDB entry 1JQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 54Right-handed alpha
Helix 2
2
A
54 73Right-handed alpha
Helix 3
3
A
77 90Right-handed alpha
Helix 4
4
A
91 123Right-handed alpha
Helix 5
5
A
142 152Right-handed alpha
Helix 6
6
A
157 167Right-handed alpha
Helix 7
7
A
183 200Right-handed alpha
Helix 8
8
A
206 227Right-handed alpha
Helix 9
9
A
236 249Right-handed alpha
Helix 10
10
A
255 269Right-handed alpha
Helix 11
11
A
300 330Right-handed alpha
Helix 12
12
A
336 351Right-handed alpha
Helix 13
13
A
369 395Right-handed alpha
Helix 14
14
A
408 426Right-handed alpha
Helix 15
15
A
434 447Right-handed alpha
Helix 16
16
A
458 474Right-handed alpha
Helix 17
17
A
482 496Right-handed alpha
Helix 18
18
A
508 524Right-handed alpha
Helix 19
19
A
540 553Right-handed alpha
Helix 20
20
A
567 573Right-handed alpha
Helix 21
21
A
573 583Right-handed alpha
Helix 22
22
A
584 592Right-handed alpha
Helix 23
23
A
603 608Right-handed alpha
Helix 24
24
A
609 630Right-handed alpha
Helix 25
25
A
644 648Right-handed 310
Helix 26
26
A
651 658Right-handed alpha
Helix 27
27
A
674 682Right-handed alpha
Helix 28
28
A
683 704Right-handed alpha
Helix 29
29
A
710 733Right-handed alpha
Helix 30
30
A
737 746Right-handed alpha
Helix 31
31
A
748 755Right-handed 310
Helix 32
32
A
774 784Right-handed alpha
Helix 33
33
A
787 792Right-handed alpha
Helix 34
34
A
793 805Right-handed alpha
Helix 35
35
A
807 819Right-handed alpha
Helix 36
36
A
819 834Right-handed alpha
Helix 37
37
A
837 848Right-handed alpha
Helix 38
38
A
853 876Right-handed alpha
Helix 39
39
A
884 914Right-handed alpha
Helix 40
40
A
950 967Right-handed alpha
Helix 41
41
B
36 54Right-handed alpha
Helix 42
42
B
54 73Right-handed alpha
Helix 43
43
B
76 89Right-handed alpha
Helix 44
44
B
91 122Right-handed alpha
Helix 45
45
B
142 152Right-handed alpha
Helix 46
46
B
157 167Right-handed alpha
Helix 47
47
B
183 200Right-handed alpha
Helix 48
48
B
206 226Right-handed alpha
Helix 49
49
B
236 251Right-handed alpha
Helix 50
50
B
251 269Right-handed alpha
Helix 51
51
B
300 330Right-handed alpha
Helix 52
52
B
336 349Right-handed alpha
Helix 53
53
B
369 395Right-handed alpha
Helix 54
54
B
408 426Right-handed alpha
Helix 55
55
B
428 433Right-handed alpha
Helix 56
56
B
434 447Right-handed alpha
Helix 57
57
B
459 472Right-handed alpha
Helix 58
58
B
482 496Right-handed alpha
Helix 59
59
B
508 524Right-handed alpha
Helix 60
60
B
525 527Right-handed 310
Helix 61
61
B
539 552Right-handed alpha
Helix 62
62
B
567 582Right-handed alpha
Helix 63
63
B
584 592Right-handed alpha
Helix 64
64
B
603 608Right-handed alpha
Helix 65
65
B
609 631Right-handed alpha
Helix 66
66
B
644 648Right-handed 310
Helix 67
67
B
651 658Right-handed alpha
Helix 68
68
B
674 682Right-handed alpha
Helix 69
69
B
683 704Right-handed alpha
Helix 70
70
B
710 733Right-handed alpha
Helix 71
71
B
735 746Right-handed alpha
Helix 72
72
B
747 755Right-handed 310
Helix 73
73
B
773 784Right-handed alpha
Helix 74
74
B
787 792Right-handed alpha
Helix 75
75
B
793 804Right-handed alpha
Helix 76
76
B
806 819Right-handed alpha
Helix 77
77
B
819 834Right-handed alpha
Helix 78
78
B
837 844Right-handed alpha
Helix 79
79
B
844 849Right-handed alpha
Helix 80
80
B
853 876Right-handed alpha
Helix 81
81
B
884 914Right-handed alpha
Helix 82
82
B
938 942Right-handed 310
Helix 83
83
B
950 967Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1JQO. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 175first strand
Strand 2
A
283 287parallel
Strand 3
A
452 456parallel
Strand 4
A
529 534parallel
Strand 5
A
561 565parallel
Strand 6
A
594 600parallel
Strand 7
A
634 640parallel
Strand 8
A
667 673parallel
Strand 9
A
169 175parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 175first strand
Strand 2
B
283 287parallel
Strand 3
B
452 458parallel
Strand 4
B
529 535parallel
Strand 5
B
561 565parallel
Strand 6
B
594 600parallel
Strand 7
B
634 640parallel
Strand 8
B
667 673parallel
Strand 9
B
169 175parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il