Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQP entry

There is 1 chain in PDB entry 1JQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1LEU 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1JQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
232 250Right-handed alpha
Helix 3
3
A
259 267Right-handed alpha
Helix 4
4
A
271 273Right-handed 310
Helix 5
5
A
277 282Right-handed alpha
Helix 6
6
A
283 289Right-handed alpha
Helix 7
7
A
294 297Right-handed 310
Helix 8
8
A
331 343Right-handed alpha
Helix 9
9
A
352 357Right-handed alpha
Helix 10
10
A
421 425Right-handed 310
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There are 3 sheets in PDB entry 1JQP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
49 51anti-parallel
Strand 4
A
57 63anti-parallel
Strand 5
A
67 72anti-parallel
Strand 6
A
75 86anti-parallel
Strand 7
A
89 97anti-parallel
Strand 8
A
110 117anti-parallel
Strand 9
A
13 19anti-parallel
Strand 10
A
110 117anti-parallel
Strand 11
A
100 104anti-parallel
Strand 12
A
75 86anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
380 389anti-parallel
Strand 3
A
345 349anti-parallel
Strand 4
A
380 389anti-parallel
Strand 5
A
396 401anti-parallel
Strand 6
A
413 417anti-parallel
Strand 7
A
362 363parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
314 322anti-parallel
Strand 3
A
430 435anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il