Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQU entry

There are 4 chains in PDB entry 1JQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 164
B
 MET 1LEU 164
C
 MET 1LEU 164
D
 MET 1LEU 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1JQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
39 51Right-handed alpha
Helix 3
3
A
59 80Right-handed alpha
Helix 4
4
A
84 91Right-handed alpha
Helix 5
5
A
92 106Right-handed alpha
Helix 6
6
A
107 112Right-handed alpha
Helix 7
7
A
114 123Right-handed alpha
Helix 8
8
A
125 135Right-handed alpha
Helix 9
9
A
136 142Right-handed alpha
Helix 10
10
A
142 156Right-handed alpha
Helix 11
11
A
158 162Right-handed 310
Helix 12
12
B
2 11Right-handed alpha
Helix 13
13
B
40 50Right-handed alpha
Helix 14
14
B
59 80Right-handed alpha
Helix 15
15
B
83 91Right-handed alpha
Helix 16
16
B
92 107Right-handed alpha
Helix 17
17
B
107 114Right-handed alpha
Helix 18
18
B
116 122Right-handed alpha
Helix 19
19
B
125 133Right-handed alpha
Helix 20
20
B
137 142Right-handed alpha
Helix 21
21
B
142 156Right-handed alpha
Helix 22
22
C
2 11Right-handed alpha
Helix 23
23
C
38 51Right-handed alpha
Helix 24
24
C
61 80Right-handed alpha
Helix 25
25
C
83 90Right-handed alpha
Helix 26
26
C
92 113Right-handed alpha
Helix 27
27
C
116 123Right-handed alpha
Helix 28
28
C
125 135Right-handed alpha
Helix 29
29
C
136 136Right-handed 310
Helix 30
30
C
137 141Right-handed 310
Helix 31
31
C
142 156Right-handed alpha
Helix 32
32
C
158 162Right-handed 310
Helix 33
33
D
2 11Right-handed alpha
Helix 34
34
D
38 51Right-handed alpha
Helix 35
35
D
59 81Right-handed alpha
Helix 36
36
D
84 91Right-handed alpha
Helix 37
37
D
95 113Right-handed alpha
Helix 38
38
D
115 123Right-handed alpha
Helix 39
39
D
127 135Right-handed alpha
Helix 40
40
D
142 156Right-handed alpha
Helix 41
41
D
158 162Right-handed 310
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There are 4 sheets in PDB entry 1JQU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
25 28anti-parallel
Strand 3
A
31 34anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
31 34anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 19first strand
Strand 2
C
25 29anti-parallel
Strand 3
C
31 34anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 19first strand
Strand 2
D
25 27anti-parallel
Strand 3
D
31 34anti-parallel
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