Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQV entry

There are 2 chains in PDB entry 1JQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 311
B
 MET 1LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1JQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 35Right-handed alpha
Helix 2
2
A
75 90Right-handed alpha
Helix 3
3
A
104 118Right-handed alpha
Helix 4
4
A
138 141Right-handed 310
Helix 5
5
A
142 154Right-handed alpha
Helix 6
6
A
170 183Right-handed alpha
Helix 7
7
A
211 214Right-handed 310
Helix 8
8
A
221 223Right-handed 310
Helix 9
9
A
224 237Right-handed alpha
Helix 10
10
A
253 264Right-handed alpha
Helix 11
11
A
271 278Right-handed alpha
Helix 12
12
A
280 297Right-handed alpha
Helix 13
13
A
300 304Right-handed 310
Helix 14
14
B
25 35Right-handed alpha
Helix 15
15
B
75 90Right-handed alpha
Helix 16
16
B
104 118Right-handed alpha
Helix 17
17
B
138 141Right-handed 310
Helix 18
18
B
142 154Right-handed alpha
Helix 19
19
B
170 183Right-handed alpha
Helix 20
20
B
211 214Right-handed 310
Helix 21
21
B
221 223Right-handed 310
Helix 22
22
B
224 237Right-handed alpha
Helix 23
23
B
253 264Right-handed alpha
Helix 24
24
B
271 278Right-handed alpha
Helix 25
25
B
280 297Right-handed alpha
Helix 26
26
B
300 304Right-handed 310
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There are 8 sheets in PDB entry 1JQV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
267 270parallel
Strand 3
A
244 248parallel
Strand 4
A
188 191parallel
Strand 5
A
161 165parallel
Strand 6
A
123 127parallel
Strand 7
A
97 100parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
195 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
207 208anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
267 270parallel
Strand 3
B
244 248parallel
Strand 4
B
188 191parallel
Strand 5
B
161 165parallel
Strand 6
B
123 127parallel
Strand 7
B
97 100parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
216 220anti-parallel
Strand 4
B
195 199anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
207 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il