Analysis of interatomic Contacts of Structural Units in PDB entry:
1JQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JQY entry

There are 15 chains in PDB entry 1JQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ALA 1ASN 103
E
 ALA 1ASN 103
F
 ALA 1ASN 103
G
 ALA 1ASN 103
H
 ALA 1ASN 103
L
 ALA 1ASN 103
M
 ALA 1ASN 103
N
 ALA 1ASN 103
O
 ALA 1ASN 103
P
 ALA 1ASN 103
V
 ALA 1ASN 103
W
 ALA 1ASN 103
X
 ALA 1ASN 103
Y
 ALA 1ASN 103
Z
 ALA 1ASN 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1JQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
4 11Right-handed alpha
Helix 2
2
D
60 78Right-handed alpha
Helix 3
3
E
4 10Right-handed alpha
Helix 4
4
E
60 79Right-handed alpha
Helix 5
5
F
4 11Right-handed alpha
Helix 6
6
F
60 78Right-handed alpha
Helix 7
7
G
4 10Right-handed alpha
Helix 8
8
G
58 78Right-handed alpha
Helix 9
9
H
4 10Right-handed alpha
Helix 10
10
H
60 79Right-handed alpha
Helix 11
11
L
4 10Right-handed alpha
Helix 12
12
L
60 79Right-handed alpha
Helix 13
13
M
4 11Right-handed alpha
Helix 14
14
M
60 78Right-handed alpha
Helix 15
15
N
4 11Right-handed alpha
Helix 16
16
N
58 79Right-handed alpha
Helix 17
17
O
4 11Right-handed alpha
Helix 18
18
O
60 79Right-handed alpha
Helix 19
19
P
4 11Right-handed alpha
Helix 20
20
P
60 79Right-handed alpha
Helix 21
21
V
4 11Right-handed alpha
Helix 22
22
V
58 60Right-handed 310
Helix 23
23
V
61 79Right-handed alpha
Helix 24
24
W
4 10Right-handed alpha
Helix 25
25
W
58 60Right-handed 310
Helix 26
26
W
61 78Right-handed alpha
Helix 27
27
X
4 10Right-handed alpha
Helix 28
28
X
60 78Right-handed alpha
Helix 29
29
Y
4 11Right-handed alpha
Helix 30
30
Y
58 60Right-handed 310
Helix 31
31
Y
61 79Right-handed alpha
Helix 32
32
Z
4 11Right-handed alpha
Helix 33
33
Z
58 60Right-handed 310
Helix 34
34
Z
61 79Right-handed alpha
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There are 3 sheets in PDB entry 1JQY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 41 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 30first strand
Strand 2
D
37 41anti-parallel
Strand 3
D
47 50anti-parallel
Strand 4
D
94 102parallel
Strand 5
D
82 88anti-parallel
Strand 6
D
15 22anti-parallel
Strand 7
D
82 88anti-parallel
Strand 8
D
94 102anti-parallel
Strand 9
E
26 30parallel
Strand 10
E
37 41anti-parallel
Strand 11
E
47 50anti-parallel
Strand 12
E
94 102parallel
Strand 13
E
82 88anti-parallel
Strand 14
E
15 22anti-parallel
Strand 15
E
82 88anti-parallel
Strand 16
E
94 102anti-parallel
Strand 17
F
26 32anti-parallel
Strand 18
F
35 41anti-parallel
Strand 19
F
47 50anti-parallel
Strand 20
F
94 102parallel
Strand 21
F
82 88anti-parallel
Strand 22
F
15 22anti-parallel
Strand 23
F
82 88anti-parallel
Strand 24
F
94 102anti-parallel
Strand 25
G
26 30anti-parallel
Strand 26
G
37 41anti-parallel
Strand 27
G
47 50anti-parallel
Strand 28
G
94 102parallel
Strand 29
G
82 88anti-parallel
Strand 30
G
15 22anti-parallel
Strand 31
G
82 88anti-parallel
Strand 32
G
94 102anti-parallel
Strand 33
H
26 32anti-parallel
Strand 34
H
35 41anti-parallel
Strand 35
H
47 50anti-parallel
Strand 36
H
94 102parallel
Strand 37
H
82 88anti-parallel
Strand 38
H
15 22anti-parallel
Strand 39
H
82 88anti-parallel
Strand 40
H
94 102anti-parallel
Strand 41
D
26 30anti-parallel
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There are 41 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 32first strand
Strand 2
L
35 41anti-parallel
Strand 3
L
47 50anti-parallel
Strand 4
L
94 102parallel
Strand 5
L
82 88anti-parallel
Strand 6
L
15 22anti-parallel
Strand 7
L
82 88anti-parallel
Strand 8
L
94 102anti-parallel
Strand 9
M
26 30anti-parallel
Strand 10
M
37 41anti-parallel
Strand 11
M
47 50anti-parallel
Strand 12
M
94 102parallel
Strand 13
M
82 88anti-parallel
Strand 14
M
15 22anti-parallel
Strand 15
M
82 88anti-parallel
Strand 16
M
94 102anti-parallel
Strand 17
N
26 30anti-parallel
Strand 18
N
37 41anti-parallel
Strand 19
N
47 50anti-parallel
Strand 20
N
94 102parallel
Strand 21
N
82 88anti-parallel
Strand 22
N
15 22anti-parallel
Strand 23
N
82 88anti-parallel
Strand 24
N
94 102anti-parallel
Strand 25
O
26 30anti-parallel
Strand 26
O
38 41anti-parallel
Strand 27
O
47 50anti-parallel
Strand 28
O
94 102parallel
Strand 29
O
82 88anti-parallel
Strand 30
O
15 22anti-parallel
Strand 31
O
82 88anti-parallel
Strand 32
O
94 102anti-parallel
Strand 33
P
26 32anti-parallel
Strand 34
P
35 41anti-parallel
Strand 35
P
47 50anti-parallel
Strand 36
P
94 102parallel
Strand 37
P
81 88anti-parallel
Strand 38
P
15 23anti-parallel
Strand 39
P
81 88anti-parallel
Strand 40
P
94 102anti-parallel
Strand 41
L
26 32parallel
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There are 41 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
26 32first strand
Strand 2
V
35 41anti-parallel
Strand 3
V
47 50anti-parallel
Strand 4
V
94 102parallel
Strand 5
V
82 88anti-parallel
Strand 6
V
15 22anti-parallel
Strand 7
V
82 88anti-parallel
Strand 8
V
94 102anti-parallel
Strand 9
W
26 30anti-parallel
Strand 10
W
37 41anti-parallel
Strand 11
W
47 50anti-parallel
Strand 12
W
94 102parallel
Strand 13
W
82 88anti-parallel
Strand 14
W
15 22anti-parallel
Strand 15
W
82 88anti-parallel
Strand 16
W
94 102anti-parallel
Strand 17
X
26 30anti-parallel
Strand 18
X
37 41anti-parallel
Strand 19
X
47 50anti-parallel
Strand 20
X
94 102parallel
Strand 21
X
82 88anti-parallel
Strand 22
X
15 22anti-parallel
Strand 23
X
82 88anti-parallel
Strand 24
X
94 102anti-parallel
Strand 25
Y
26 30anti-parallel
Strand 26
Y
38 41anti-parallel
Strand 27
Y
47 50anti-parallel
Strand 28
Y
94 102parallel
Strand 29
Y
82 88anti-parallel
Strand 30
Y
15 22anti-parallel
Strand 31
Y
82 88anti-parallel
Strand 32
Y
94 102anti-parallel
Strand 33
Z
26 32anti-parallel
Strand 34
Z
35 41anti-parallel
Strand 35
Z
47 50anti-parallel
Strand 36
Z
94 102parallel
Strand 37
Z
81 88anti-parallel
Strand 38
Z
15 23anti-parallel
Strand 39
Z
81 88anti-parallel
Strand 40
Z
94 102anti-parallel
Strand 41
V
26 32parallel
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