Analysis of interatomic Contacts of Structural Units in PDB entry:
1JR1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JR1 entry

There are 2 chains in PDB entry 1JR1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 17PHE 514
B
 SER 11PHE 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1JR1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
31 33Right-handed 310
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
75 86Right-handed alpha
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
193 201Right-handed alpha
Helix 7
7
A
223 233Right-handed alpha
Helix 8
8
A
254 267Right-handed alpha
Helix 9
9
A
280 294Right-handed alpha
Helix 10
10
A
306 317Right-handed alpha
Helix 11
11
A
332 338Right-handed alpha
Helix 12
12
A
342 355Right-handed alpha
Helix 13
13
A
356 358Right-handed 310
Helix 14
14
A
369 379Right-handed alpha
Helix 15
15
A
452 471Right-handed alpha
Helix 16
16
A
475 486Right-handed alpha
Helix 17
17
A
494 502Right-handed alpha
Helix 18
18
B
19 25Right-handed alpha
Helix 19
19
B
31 33Right-handed 310
Helix 20
20
B
45 49Right-handed 310
Helix 21
21
B
75 86Right-handed alpha
Helix 22
22
B
96 109Right-handed alpha
Helix 23
23
B
254 267Right-handed alpha
Helix 24
24
B
280 294Right-handed alpha
Helix 25
25
B
306 317Right-handed alpha
Helix 26
26
B
332 337Right-handed alpha
Helix 27
27
B
342 355Right-handed alpha
Helix 28
28
B
356 358Right-handed 310
Helix 29
29
B
369 380Right-handed alpha
Helix 30
30
B
387 392Right-handed alpha
Helix 31
31
B
452 472Right-handed alpha
Helix 32
32
B
475 485Right-handed alpha
Helix 33
33
B
494 502Right-handed alpha
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There are 9 sheets in PDB entry 1JR1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
490 492anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
60 61anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
88 91parallel
Strand 3
A
247 250parallel
Strand 4
A
270 273parallel
Strand 5
A
298 304parallel
Strand 6
A
320 323parallel
Strand 7
A
361 364parallel
Strand 8
A
383 386parallel
Strand 9
A
65 67parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
210 213anti-parallel
Strand 4
A
188 189parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
407 412anti-parallel
Strand 3
A
444 448anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
490 492anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
60 61anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
88 91parallel
Strand 3
B
247 250parallel
Strand 4
B
270 273parallel
Strand 5
B
298 304parallel
Strand 6
B
320 323parallel
Strand 7
B
361 364parallel
Strand 8
B
383 386parallel
Strand 9
B
65 67parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
407 412anti-parallel
Strand 3
B
444 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il