Analysis of interatomic Contacts of Structural Units in PDB entry:
1JR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JR2 entry

There are 2 chains in PDB entry 1JR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 260
B
 MET 1GLN 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1JR2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 25Right-handed alpha
Helix 2
2
A
42 51Right-handed alpha
Helix 3
3
A
52 56Right-handed 310
Helix 4
4
A
63 77Right-handed alpha
Helix 5
5
A
79 87Right-handed alpha
Helix 6
6
A
87 94Right-handed alpha
Helix 7
7
A
100 110Right-handed alpha
Helix 8
8
A
121 131Right-handed alpha
Helix 9
9
A
145 149Right-handed 310
Helix 10
10
A
150 157Right-handed alpha
Helix 11
11
A
175 188Right-handed alpha
Helix 12
12
A
197 213Right-handed alpha
Helix 13
13
A
214 219Right-handed 310
Helix 14
14
A
225 235Right-handed alpha
Helix 15
15
A
247 259Right-handed alpha
Helix 16
16
B
17 25Right-handed alpha
Helix 17
17
B
42 51Right-handed alpha
Helix 18
18
B
52 56Right-handed 310
Helix 19
19
B
63 77Right-handed alpha
Helix 20
20
B
79 86Right-handed alpha
Helix 21
21
B
86 93Right-handed alpha
Helix 22
22
B
100 110Right-handed alpha
Helix 23
23
B
121 131Right-handed alpha
Helix 24
24
B
145 149Right-handed 310
Helix 25
25
B
150 158Right-handed alpha
Helix 26
26
B
175 188Right-handed alpha
Helix 27
27
B
197 213Right-handed alpha
Helix 28
28
B
214 219Right-handed 310
Helix 29
29
B
225 235Right-handed alpha
Helix 30
30
B
247 259Right-handed alpha
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There are 6 sheets in PDB entry 1JR2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
2 7parallel
Strand 3
A
192 195parallel
Strand 4
A
220 223parallel
Strand 5
A
241 242parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
168 172anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
58 61parallel
Strand 3
A
139 143parallel
Strand 4
A
162 166parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
2 5parallel
Strand 3
B
192 195parallel
Strand 4
B
220 223parallel
Strand 5
B
241 242parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
168 172anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
58 61parallel
Strand 3
B
139 143parallel
Strand 4
B
162 166parallel
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