Analysis of interatomic Contacts of Structural Units in PDB entry:
1JR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JR7 entry

There is 1 chain in PDB entry 1JR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15GLN 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1JR7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 50Right-handed alpha
Helix 2
2
A
53 60Right-handed alpha
Helix 3
3
A
61 75Right-handed alpha
Helix 4
4
A
78 89Right-handed alpha
Helix 5
5
A
104 106Right-handed 310
Helix 6
6
A
107 122Right-handed alpha
Helix 7
7
A
194 196Right-handed 310
Helix 8
8
A
198 204Right-handed alpha
Helix 9
9
A
205 210Right-handed 310
Helix 10
10
A
252 268Right-handed alpha
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There are 5 sheets in PDB entry 1JR7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
94 99parallel
Strand 4
A
282 286anti-parallel
Strand 5
A
172 181anti-parallel
Strand 6
A
304 314anti-parallel
Strand 7
A
123 125anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
94 99parallel
Strand 4
A
282 286anti-parallel
Strand 5
A
172 181anti-parallel
Strand 6
A
304 314anti-parallel
Strand 7
A
136 140anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
290 294anti-parallel
Strand 3
A
188 192anti-parallel
Strand 4
A
273 275anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
212 214anti-parallel
Strand 3
A
248 249anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
239 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il