Analysis of interatomic Contacts of Structural Units in PDB entry:
1JRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JRH entry

There are 3 chains in PDB entry 1JRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 1LYS 207
H
 ALA 1LYS 221
I
 SER 11SER 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1JRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
80 82Right-handed 310
Helix 2
2
H
64 66Right-handed 310
Helix 3
3
H
84 86Right-handed 310
Helix 4
4
H
213 215Right-handed 310
Helix 5
5
I
71 73Right-handed 310
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There are 11 sheets in PDB entry 1JRH. Click on sheet of interest to get list of strands forming it: E, F, G, H, I, A, B, C, D, J, K,

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 106parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
85 90first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
45 48anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 116first strand
Strand 2
L
134 137anti-parallel
Strand 3
L
175 177anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 147first strand
Strand 2
L
195 197anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
107 109first strand
Strand 2
H
88 94anti-parallel
Strand 3
H
35 39anti-parallel
Strand 4
H
49 52anti-parallel
Strand 5
H
57 59anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
153 156first strand
Strand 2
H
209 212anti-parallel
Strand 3
H
217 219anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
171 173first strand
Strand 2
H
189 191anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
19 21first strand
Strand 2
I
28 30anti-parallel
Strand 3
I
67 69anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
80 88first strand
Strand 2
I
41 49anti-parallel
Strand 3
I
57 60anti-parallel
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