Analysis of interatomic Contacts of Structural Units in PDB entry:
1JRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JRK entry

There are 4 chains in PDB entry 1JRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 148
B
 MET 1ALA 147
C
 MET 1ALA 148
D
 MET 1GLU 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1JRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 51Right-handed alpha
Helix 2
2
A
115 119Right-handed 310
Helix 3
3
A
124 148Right-handed alpha
Helix 4
4
B
37 51Right-handed alpha
Helix 5
5
B
115 119Right-handed 310
Helix 6
6
B
123 143Right-handed alpha
Helix 7
7
C
37 51Right-handed alpha
Helix 8
8
C
115 119Right-handed 310
Helix 9
9
C
124 141Right-handed alpha
Helix 10
10
D
37 51Right-handed alpha
Helix 11
11
D
115 119Right-handed 310
Helix 12
12
D
124 150Right-handed alpha
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There are 15 sheets in PDB entry 1JRK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
68 70anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
89 103anti-parallel
Strand 5
A
2 7first strand
Strand 6
A
29 31anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
68 70anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
89 103anti-parallel
Strand 5
A
52 57first strand
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
109 112anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
68 70anti-parallel
Strand 3
B
76 83anti-parallel
Strand 4
B
88 103anti-parallel
Strand 5
B
2 7first strand
Strand 6
B
29 31anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
68 70anti-parallel
Strand 3
B
76 83anti-parallel
Strand 4
B
88 103anti-parallel
Strand 5
B
52 56first strand
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
9 10first strand
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
25 26first strand
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
68 70anti-parallel
Strand 3
C
76 84anti-parallel
Strand 4
C
87 103anti-parallel
Strand 5
C
2 7first strand
Strand 6
C
29 31anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
68 70anti-parallel
Strand 3
C
76 84anti-parallel
Strand 4
C
87 103anti-parallel
Strand 5
C
52 57first strand
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
13 18anti-parallel
Strand 3
C
9 10first strand
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
13 18anti-parallel
Strand 3
C
25 26first strand
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
D
76 83anti-parallel
Strand 3
D
88 103anti-parallel
Strand 4
D
2 7first strand
Strand 5
D
29 31anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
D
76 83anti-parallel
Strand 3
D
88 103anti-parallel
Strand 4
D
52 57first strand
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 112first strand
Strand 2
D
13 18anti-parallel
Strand 3
D
9 10first strand
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 112first strand
Strand 2
D
13 18anti-parallel
Strand 3
D
25 26first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il