Analysis of interatomic Contacts of Structural Units in PDB entry:
1JRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JRL entry

There is 1 chain in PDB entry 1JRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1JRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
18 21Right-handed 310
Helix 3
3
A
22 31Right-handed alpha
Helix 4
4
A
46 62Right-handed alpha
Helix 5
5
A
80 98Right-handed alpha
Helix 6
6
A
110 113Right-handed 310
Helix 7
7
A
114 132Right-handed alpha
Helix 8
8
A
140 146Right-handed alpha
Helix 9
9
A
147 151Right-handed 310
Helix 10
10
A
159 161Right-handed 310
Helix 11
11
A
162 175Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JRL.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
2 8parallel
Strand 3
A
65 69parallel
Strand 4
A
101 105parallel
Strand 5
A
136 137parallel
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